View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_32 (Length: 411)
Name: NF9303_low_32
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 45282316 - 45282711
Alignment:
| Q |
1 |
attgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttctaaat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45282316 |
attgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctccttggtttctaaat |
45282415 |
T |
|
| Q |
101 |
gccacggcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaat |
200 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282416 |
gccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaat |
45282515 |
T |
|
| Q |
201 |
taattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaatgaattttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282516 |
taattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaatgaattttga |
45282615 |
T |
|
| Q |
301 |
gagtgatgccactttttctcatatactctttcttcattcataagtacataattaattaaataaaataaaaaagttttgatcgatgataattgaatt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282616 |
gagtgatgccactttttctcatatactctttcttcattcataagtaaataattaattaaataaaataaaaaagttttgatcgatgataattgaatt |
45282711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 45274073 - 45274470
Alignment:
| Q |
1 |
attgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttctaaat |
100 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274073 |
attgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctcctacgtttctaaat |
45274172 |
T |
|
| Q |
101 |
gccacggcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaat |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
45274173 |
gccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccctattgcggtgttggctgcacgcatggataatcaat |
45274272 |
T |
|
| Q |
201 |
taattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaatgaattttga |
300 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||| ||| | | ||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
45274273 |
taattagtaatttcgatcacactggctatatatgtcaatgttatatgtatatatttctcttttcaatgcgagttatgttttcttcaaaaataaattttga |
45274372 |
T |
|
| Q |
301 |
gagtgatgccactttttctcatatactctttcttcattcataa-gtacataattaattaaataaaat-aaaaaagttttgatcgatgataattgaatt |
396 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||| |||||| ||| | ||||||| ||||||||| ||||||| |||||| ||| ||||||||||| |
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| T |
45274373 |
gagtgatgctactttttcttatatactctttcttcaatcataaggtatacaattaatcaaataaaataaaaaaagctttgatagataataattgaatt |
45274470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 370
Target Start/End: Original strand, 45270547 - 45270914
Alignment:
| Q |
2 |
ttgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttctaaatg |
101 |
Q |
| |
|
||||||||| | || |||||| ||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45270547 |
ttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctcctatgtttctaaatg |
45270646 |
T |
|
| Q |
102 |
ccacggcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaatt |
201 |
Q |
| |
|
|||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
45270647 |
ccacagcttgcataccggcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaatt |
45270746 |
T |
|
| Q |
202 |
aattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagtt-atgttttcttcaaaaatgaattttga |
300 |
Q |
| |
|
||||||||| ||| || ||| |||||||||| | ||| | | | ||| |||||||||||||||| |||| ||||||| |||||||||||||||||| |
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| T |
45270747 |
aattagtaacttctataacaccggctatatatatgtatg---tgtctatatatatatcttttcaatgtgagttaatgtttttttcaaaaatgaattttga |
45270843 |
T |
|
| Q |
301 |
gagtgatgccactttttctcatatactctttcttcattcataa-gtacataattaattaaataaaataaaa |
370 |
Q |
| |
|
||||||||| ||| |||| ||| |||||| ||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
45270844 |
gagtgatgctactatttcacatctactctctcttcattcataaggtacacaattaattaaataaaataaaa |
45270914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 45293656 - 45293904
Alignment:
| Q |
1 |
attgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttctaaat |
100 |
Q |
| |
|
|||||||||| | || |||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45293656 |
attgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttctaaat |
45293755 |
T |
|
| Q |
101 |
gccacggcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaat |
200 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |
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| T |
45293756 |
gccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatcaat |
45293855 |
T |
|
| Q |
201 |
taattagtaatttcgatcacattggc---tatatatgtcaatgttatat |
246 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||| |||||||||||||| |
|
|
| T |
45293856 |
taattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45293904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 45302616 - 45302864
Alignment:
| Q |
1 |
attgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttctaaat |
100 |
Q |
| |
|
|||||||||| | || |||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
45302616 |
attgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttctaaat |
45302715 |
T |
|
| Q |
101 |
gccacggcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaat |
200 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |
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| T |
45302716 |
gccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatcaat |
45302815 |
T |
|
| Q |
201 |
taattagtaatttcgatcacattggc---tatatatgtcaatgttatat |
246 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||| |||||||||||||| |
|
|
| T |
45302816 |
taattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45302864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 257 - 396
Target Start/End: Original strand, 45293957 - 45294099
Alignment:
| Q |
257 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcat--atactctttcttcattcataa-gtacataatt |
353 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||| ||||| |||| |
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|
| T |
45293957 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaatt |
45294056 |
T |
|
| Q |
354 |
aattaaataaaataaaaaagttttgatcgatgataattgaatt |
396 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45294057 |
tattaaataaaataaaaaagttgtgatcgatgataattgaatt |
45294099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 257 - 396
Target Start/End: Original strand, 45302917 - 45303059
Alignment:
| Q |
257 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcat--atactctttcttcattcataa-gtacataatt |
353 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||| ||||| |||| |
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| T |
45302917 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaatt |
45303016 |
T |
|
| Q |
354 |
aattaaataaaataaaaaagttttgatcgatgataattgaatt |
396 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45303017 |
tattaaataaaataaaaaagttgtgatcgatgataattgaatt |
45303059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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