View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9303_low_33 (Length: 410)

Name: NF9303_low_33
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9303_low_33
NF9303_low_33
[»] chr2 (4 HSPs)
chr2 (127-254)||(40727790-40727917)
chr2 (294-394)||(5278116-5278217)
chr2 (294-394)||(40727651-40727752)
chr2 (127-254)||(5278255-5278372)
[»] chr3 (2 HSPs)
chr3 (294-394)||(53870341-53870442)
chr3 (125-254)||(53870484-53870603)
[»] chr4 (3 HSPs)
chr4 (325-394)||(624729-624798)
chr4 (127-179)||(624425-624477)
chr4 (225-254)||(624642-624671)
[»] chr7 (1 HSPs)
chr7 (38-77)||(765462-765501)
[»] chr1 (1 HSPs)
chr1 (157-251)||(51976109-51976204)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 127 - 254
Target Start/End: Complemental strand, 40727917 - 40727790
Alignment:
Q  127 ggtggcatttaacctggaacaatgaaaatttttcccaccatagaaaagtgacttttttcaaggcacgtggcagttgctataggttgtgaaaacaattcta 226  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  40727917 ggtggcatttaatctgggacaatgaaattttttcccaccatagaaaagtgacttttttccaggcacgtggcagttgctacaggttgtgaaaacaattcta 40727818  T
Q  227 tttattttaaagcaatttgaaaacaatt 254  Q
    ||||||||||||||||||||||||||||    
T  40727817 tttattttaaagcaatttgaaaacaatt 40727790  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 294 - 394
Target Start/End: Complemental strand, 5278217 - 5278116
Alignment:
Q  294 aactatctgtcagtatcctctatcacc-ccaccgtccactagcttctcacaatagaattttctttcatttgctcttgcaaaattatttcctggagaagtt 392  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5278217 aactatctgtcagtatcctctatcacctccaccgtccaccagcttctcacaatagaattttctttcatttgctcttgcaaaattattttctggagaagtt 5278118  T
Q  393 gt 394  Q
    ||    
T  5278117 gt 5278116  T

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Target: chr2; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 294 - 394
Target Start/End: Complemental strand, 40727752 - 40727651
Alignment:
Q  294 aactatctgtcagtatcctctatcacccc-accgtccactagcttctcacaatagaattttctttcatttgctcttgcaaaattatttcctggagaagtt 392  Q
    |||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40727752 aactatctgtcactatcctctatcacccccaccgtccaccagcttctcacaatagaattttctttcatttgctcttgcaaaattatttcctggagaagtt 40727653  T
Q  393 gt 394  Q
    ||    
T  40727652 gt 40727651  T

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Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 127 - 254
Target Start/End: Complemental strand, 5278372 - 5278255
Alignment:
Q  127 ggtggcatttaacctggaacaatgaaaatttttcccaccatagaaaagtgacttttttcaaggcacgtggcagttgctataggttgtgaaaacaattcta 226  Q
    ||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||| ||||||||||||          ||||||||||||||||||    
T  5278372 ggtggcatttaacctgggacaatgaaattttttcccaccataaaaaagtgacttttttccaggcacgtggca----------gttgtgaaaacaattcta 5278283  T
Q  227 tttattttaaagcaatttgaaaacaatt 254  Q
    ||||||||||||||||||||||||||||    
T  5278282 tttattttaaagcaatttgaaaacaatt 5278255  T

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Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 294 - 394
Target Start/End: Complemental strand, 53870442 - 53870341
Alignment:
Q  294 aactatctgtcagtatcctctatcacc-ccaccgtccactagcttctcacaatagaattttctttcatttgctcttgcaaaattatttcctggagaagtt 392  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53870442 aactatctgtcagtatcctctatcacctccaccgtccaccagcttctcacaatagaattttctttcatttgctcttgcaaaattatttcctggagaagtt 53870343  T
Q  393 gt 394  Q
    ||    
T  53870342 gt 53870341  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 125 - 254
Target Start/End: Complemental strand, 53870603 - 53870484
Alignment:
Q  125 atggtggcatttaacctggaacaatgaaaatttttcccaccatagaaaagtgacttttttcaaggcacgtggcagttgctataggttgtgaaaacaattc 224  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||          ||||||||||||||||     
T  53870603 atggtggcatttaacctgggacaatgaaattttttcccaccatagaaaagtgacttttttccaggcacgtggc----------ggttgtgaaaacaatta 53870514  T
Q  225 tatttattttaaagcaatttgaaaacaatt 254  Q
    ||||||||||||||||||||||||||||||    
T  53870513 tatttattttaaagcaatttgaaaacaatt 53870484  T

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Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 325 - 394
Target Start/End: Original strand, 624729 - 624798
Alignment:
Q  325 cgtccactagcttctcacaatagaattttctttcatttgctcttgcaaaattatttcctggagaagttgt 394  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  624729 cgtccaccagcttctcacaatagaattttctttcatttgctcttgcaaaattatttcctggagaagttgt 624798  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 624425 - 624477
Alignment:
Q  127 ggtggcatttaacctggaacaatgaaaatttttcccaccatagaaaagtgact 179  Q
    ||||||||||||  ||| ||||||||| |||||||||||||||||||||||||    
T  624425 ggtggcatttaaaatgggacaatgaaattttttcccaccatagaaaagtgact 624477  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 254
Target Start/End: Original strand, 624642 - 624671
Alignment:
Q  225 tatttattttaaagcaatttgaaaacaatt 254  Q
    ||||||||||||||||||||||||||||||    
T  624642 tatttattttaaagcaatttgaaaacaatt 624671  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 765501 - 765462
Alignment:
Q  38 aacaaaattaaattcgtccccacattgtttttacctttat 77  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  765501 aacaaaattaaattcgtccccacattgtttttccctttat 765462  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 51976204 - 51976109
Alignment:
Q  157 tttcccaccatagaaaagtgac-ttttttcaaggcacgtggcagttgctataggttgtgaaaacaattctatttattttaaagcaatttgaaaaca 251  Q
    ||||||||||||| |||||| | ||||||| ||||| ||||||||||||  |  |||||||||||||| | |||||||||||| |||  |||||||    
T  51976204 tttcccaccataggaaagtgccattttttccaggcaggtggcagttgctgcaatttgtgaaaacaattgtttttattttaaagtaataagaaaaca 51976109  T

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