View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_35 (Length: 385)
Name: NF9303_low_35
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 27143531 - 27143163
Alignment:
| Q |
1 |
ataagaaatagctgaactattttcttcttcataggcaaattgtgcatgaaaatcctctgtcggtatattgttacatgtatctgttggtgtacatgttcct |
100 |
Q |
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| T |
27143531 |
ataagaaatagctgaactattttcttcatcataagcaaattgtgcatgaatatcctctgtcattatattattacatgtctctgttggtgtacatgttcct |
27143432 |
T |
|
| Q |
101 |
tgagtcacatcagatgaagaagcatcacatagaaattttggatgttcatcatgattaagaattttttcatccatagtttgcattatttctcttgaaatct |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27143431 |
tgagtgacatcagatgaagaagcatcacatagaaattttggatgttcatcatgattaagaattttttcatccatagtttgcattatttctcttgaaatct |
27143332 |
T |
|
| Q |
201 |
cagtgccaccacttgagtcttccccttgcacttgctcttcaaagaccgtcatttccttttctgtatccttaacttgttcttcttcattagtttttgttgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27143331 |
cagtgccaccacttgagtcttccccttgcacttgctcttcaaagaccgtcatttccttttttgtatccttaacttgttcttcttcattagtttttgttgg |
27143232 |
T |
|
| Q |
301 |
aatttgaattgtcttcttgaaaattcgacacaatgaatatgaatcctgaaattttttcataacattact |
369 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27143231 |
aatttgaattgttttcttgaaaattcgacacaatgaatatgaatcctgaaattttttcataacattact |
27143163 |
T |
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