View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_37 (Length: 367)
Name: NF9303_low_37
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 10970078 - 10969725
Alignment:
| Q |
17 |
aatagccacattagccaaaagttaccctacttcacacacacattagctttttgtaaatataataacacctacacacaaagatccatttagctagctagaa |
116 |
Q |
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| T |
10970078 |
aatagctacattagccaaaagctaccctacttcacacacaaattagctttttgtaaatataataacacctacacacaaagatccatttagctagctagaa |
10969979 |
T |
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| Q |
117 |
gaaaaataaaatcataaatagctagctag--------gtatacatgaatttccctctcacattattttatcaaaataagaaagaaaatcccatgggacat |
208 |
Q |
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| T |
10969978 |
gaaaaataaaatcataaatagctagctagctagctaggtatacatgaatttccctctcacattattttatcaaaataagaaagaaaatcccatgggacat |
10969879 |
T |
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| Q |
209 |
tctaattaactccatattcatgtggctcgaacaagtggtgaatgaggagatatgattatgtgattgtgaggtgacaaaacattctcatcaaacctccttg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10969878 |
tctaattaactccatattcatgtggctcgaacaagtggtgaatgaggagatatgattatgtgattgtgaggtgacaaaacattctcatcaaacctcgttg |
10969779 |
T |
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| Q |
309 |
aagtgaagctaagacttaaatttggttgccaacgtttgacttcaattttcttct |
362 |
Q |
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| T |
10969778 |
aagtgaagctaagacttaaatttggttgccaacgtttgacttcaattttcttct |
10969725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 264
Target Start/End: Original strand, 7754209 - 7754327
Alignment:
| Q |
149 |
tacatgaatttccctctcacattattttatcaaaataagaaagaaaatcccatgggacattctaattaactc---catattcatgtggctcgaacaagtg |
245 |
Q |
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| T |
7754209 |
tacataaattcccctagcacattattttatcaaaataagaaagaaaattccatagaactttctaatttattccatcatatccatgttgctcgaacaagtg |
7754308 |
T |
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| Q |
246 |
gtgaatgaggagatatgat |
264 |
Q |
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| T |
7754309 |
gtgaatgaggaaatatgat |
7754327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 7754331 - 7754388
Alignment:
| Q |
291 |
tctcatcaaacctccttgaagtgaagctaagacttaaatttggttgccaacgtttgacttcaa |
353 |
Q |
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| T |
7754331 |
tctcatcaaacctccttgaagtgaagc-----cttaaatttggttgccaacgtttgacttcaa |
7754388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 29963392 - 29963440
Alignment:
| Q |
273 |
tgtgaggtgacaaaacattctcatcaaacctccttgaagtgaagctaag |
321 |
Q |
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| T |
29963392 |
tgtgaggagacataacattctcatcaaaccttcttgaagaaaagctaag |
29963440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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