View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9303_low_4 (Length: 616)

Name: NF9303_low_4
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9303_low_4
NF9303_low_4
[»] chr4 (4 HSPs)
chr4 (318-597)||(7664090-7664368)
chr4 (209-327)||(7663935-7664053)
chr4 (85-150)||(14193470-14193535)
chr4 (88-156)||(37972978-37973046)
[»] chr7 (1 HSPs)
chr7 (10-201)||(23205707-23205898)
[»] scaffold0418 (1 HSPs)
scaffold0418 (209-327)||(7001-7119)
[»] chr3 (3 HSPs)
chr3 (10-156)||(14031490-14031636)
chr3 (24-152)||(23426633-23426761)
chr3 (21-201)||(11587197-11587381)
[»] chr6 (2 HSPs)
chr6 (24-156)||(24891725-24891857)
chr6 (25-157)||(24988559-24988691)
[»] chr8 (1 HSPs)
chr8 (85-150)||(40730927-40730992)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-144; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 318 - 597
Target Start/End: Original strand, 7664090 - 7664368
Alignment:
Q  318 tatatatataagtcaactcagtgactcaccacaacataaaagagtaaatatatataaagacaactgaataacagactctaattaactattattatcgaaa 417  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7664090 tatatatataagtcaactcagtgagtcaccacaacataaa-gagtaaatatatataaagacaactgaataacagactctaattaactattattattgaaa 7664188  T
Q  418 aaacgtactctaattaactagttagcttaactctaattagattagattaagtcagcattggttagatttcgaagtattacataaataggtctactcctaa 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7664189 aaacgtactctaattaactagttagcttaactctaattagattagattaagtcagcattggttagatttcgaagtattacataaataggtctactcctaa 7664288  T
Q  518 ttatttagatacacatagttacttgcagcttaagctatatcacatcactactaattctttgtatccaatcctagctagta 597  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7664289 ttatttagatacacatagttacttgcagcttaagctatatcacatcactactaattttttgtatccaatcctagctagta 7664368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 209 - 327
Target Start/End: Original strand, 7663935 - 7664053
Alignment:
Q  209 tcattgagtatattattttgccgatagcttaggtttctttgagaggagcttatataataaagtatcatagacctctttggatccgaaaaaatatatactt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7663935 tcattgagtatattattttgccgatagcttaggtttctttgagaggagcttatataataaagtatcatagacctctttggatccgaaaaaatatatactt 7664034  T
Q  309 atttaagagtatatatata 327  Q
    |||||||||||||||||||    
T  7664035 atttaagagtatatatata 7664053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 14193470 - 14193535
Alignment:
Q  85 cccctcctcttgatctcatagacaagcttagaattgatgctatgggaacctgcttcctaagagctt 150  Q
    ||||||||| ||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||    
T  14193470 cccctcctcatgatctcattgacaagcttaaaattgatgctatgggaacttgcttcctaagagctt 14193535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 37973046 - 37972978
Alignment:
Q  88 ctcctcttgatctcatagacaagcttagaattgatgctatgggaacctgcttcctaagagcttaatttt 156  Q
    |||||| ||||||||| |||||| ||  ||||||||||||| |||| |||||||||||||||| |||||    
T  37973046 ctcctcatgatctcatcgacaagattcaaattgatgctatgagaacttgcttcctaagagcttgatttt 37972978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 160; Significance: 6e-85; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 23205898 - 23205707
Alignment:
Q  10 gagatggacatcattgcgcagattttttagccaagctcggagcctcgtctaatgcagccctcacggagcaccaaacccctcctcttgatctcatagacaa 109  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  23205898 gagaaggaaatcattgcgcagattttttagccaagctcggagcctcgtcaaatgcaaccctcacggagcaccaaactcctcctcttgatctcatagacaa 23205799  T
Q  110 gcttagaattgatgctatgggaacctgcttcctaagagcttaattttcatttagcctttgttttcttttctgttattattagctttgtaacc 201  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  23205798 gcttagaattgatgctatggtaacctgcttcctaagagcttaattttcttttagcctttgttttcttttctgttattattagctttgaaacc 23205707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 209 - 327
Target Start/End: Complemental strand, 7119 - 7001
Alignment:
Q  209 tcattgagtatattattttgccgatagcttaggtttctttgagaggagcttatataataaagtatcatagacctctttggatccgaaaaaatatatactt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7119 tcattgagtatattattttgccgatagcttaggtttctttgagaggagcttatataataaagtatcatagacctctttggatccgaaaaaatatatactt 7020  T
Q  309 atttaagagtatatatata 327  Q
    |||||||||||||||||||    
T  7019 atttaagagtatatatata 7001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 1e-55; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 14031636 - 14031490
Alignment:
Q  10 gagatggacatcattgcgcagattttttagccaagctcggagcctcgtctaatgcagccctcacggagcaccaaacccctcctcttgatctcatagacaa 109  Q
    |||| ||| |||| ||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14031636 gagaaggaaatcactgcgcagattttttagccaagcttggagccttgtcaaatgcagccctcacggagcaccaaacccctcctcttgatctcattgacaa 14031537  T
Q  110 gcttagaattgatgctatgggaacctgcttcctaagagcttaatttt 156  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||    
T  14031536 gcttagaattgatgctatgggaacctatttcctaagagcttaatttt 14031490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 23426633 - 23426761
Alignment:
Q  24 tgcgcagattttttagccaagctcggagcctcgtctaatgcagccctcacggagcaccaaacccctcctcttgatctcatagacaagcttagaattgatg 123  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  23426633 tgcgcagattttttagccaagcttggagcctcgtcaaatgcagccctcacggagcaccaaacccctcctcttgatctcattgacaagcttagaattgacg 23426732  T
Q  124 ctatgggaacctgcttcctaagagcttaa 152  Q
    ||||||||||||  |||||||||||||||    
T  23426733 ctatgggaacctatttcctaagagcttaa 23426761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 21 - 201
Target Start/End: Complemental strand, 11587381 - 11587197
Alignment:
Q  21 cattgcgcagattttttagccaagctcggagcctcgtctaatgcagccctcacggagcaccaaacccctcctcttgatctcatagacaagcttagaattg 120  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||| |||  ||||||| |  |||||||||||||||| ||   |||||||| |||||    
T  11587381 cattgcgcagattttttagccaagcttggagcctcgtcaaatgcagctctcttggagcacgaggcccctcctcttgatctgatccgcaagcttaaaattg 11587282  T
Q  121 atgctatgggaacctgcttcctaagagcttaattttc--atttagcct--ttgttttcttttctgttattattagctttgtaacc 201  Q
    |||||||||||||||||||||||||||||||||||||   |||| |||  |  ||||||||||||||||||||||||||||||||    
T  11587281 atgctatgggaacctgcttcctaagagcttaattttctattttacccttctctttttcttttctgttattattagctttgtaacc 11587197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 9e-50; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 24891857 - 24891725
Alignment:
Q  24 tgcgcagattttttagccaagctcggagcctcgtctaatgcagccctcacggagcaccaaacccctcctcttgatctcatagacaagcttagaattgatg 123  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  24891857 tgcgcagattttttagccaagcttggagcctcgtcaaatgcagccattacggagcaccaaacccctcctcttgatctcatggacaagcttagaatggatg 24891758  T
Q  124 ctatgggaacctgcttcctaagagcttaatttt 156  Q
    ||||||||||||  |||||||||||||||||||    
T  24891757 ctatgggaacctatttcctaagagcttaatttt 24891725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 157
Target Start/End: Complemental strand, 24988691 - 24988559
Alignment:
Q  25 gcgcagattttttagccaagctcggagcctcgtctaatgcagccctcacggagcaccaaacccctcctcttgatctcatagacaagcttagaattgatgc 124  Q
    ||||||| || ||||||||| |||||||| | || | |||| || ||  ||| |||||  ||||||||||||||||||| | || ||||| |||||||||    
T  24988691 gcgcagacttcttagccaagatcggagccacatcaactgcacccttcttggaacaccagtcccctcctcttgatctcatcggcatgcttaaaattgatgc 24988592  T
Q  125 tatgggaacctgcttcctaagagcttaattttc 157  Q
    |  ||||||||| || || ||| ||||||||||    
T  24988591 ttcgggaacctgttttctgagaacttaattttc 24988559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 40730927 - 40730992
Alignment:
Q  85 cccctcctcttgatctcatagacaagcttagaattgatgctatgggaacctgcttcctaagagctt 150  Q
    ||||||||| |||||||||||||  |||||| | ||||||||||||||| || |||| ||||||||    
T  40730927 cccctcctcatgatctcatagacttgcttaggaatgatgctatgggaacttgtttcccaagagctt 40730992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University