View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_41 (Length: 358)
Name: NF9303_low_41
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 351
Target Start/End: Original strand, 42741866 - 42742220
Alignment:
| Q |
11 |
cttcattggtagctggaaacaatataccattatcaagtctacctcttgtatacctccaag--------------aatctccatgaatatgctcacaattc |
96 |
Q |
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| T |
42741866 |
cttcattggtagctggaaacaatataccattatcaagtctacctcttgtatacctccaaggtgagatagcttagaatctccatgaatatgctcacaattc |
42741965 |
T |
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| Q |
97 |
ctacactatatgccaaatctggcatagtgttgccaatatgtttcactagtatcctcttatgatgcataagcgcgcaaccttttcttggatcttttaaatt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741966 |
ctacactatatgccaaatctggcatagtgttgccaatatgtttcactagtatcctcttatgatgcataagcgcgcaaccttttcttggatcttttaaatt |
42742065 |
T |
|
| Q |
197 |
ctatgccaagaaagtatgatannnnnnnacccaagccaagtcagctcaaatttctttatcatgcttcttttgaaatcacttatgttagattcgtttctac |
296 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42742066 |
ctatgccaagaaagtatgatatttttttacccaagccaagtcagctcaaatttctttatcatgcttcttttgaaatcacttatgttagattcgtttctac |
42742165 |
T |
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| Q |
297 |
atctaattagcaaatcatctgcataaagacatatcacaatattacacctttgctt |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42742166 |
ctctaattagcaaatcatctgcataaagacatatcacaatattacacctttgctt |
42742220 |
T |
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