View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_42 (Length: 358)
Name: NF9303_low_42
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 6630067 - 6629741
Alignment:
| Q |
19 |
atttaatgaagataggccaacgctgattgacaaactcttagcgcatgagggttgtgatttagtgaaaaatgtgtgttttgggaatggatgaggtggttgt |
118 |
Q |
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| T |
6630067 |
atttaatgaagataggccaacgctgattaacaaactcttaacgcatgagggttgtgatttagtgaaaaatgtgtgttgtgggaatggatgaggtggttgt |
6629968 |
T |
|
| Q |
119 |
tgattgtatacacttgcttggcttggggttttggggtctcaatacgtagtttttcgttggataggtgtgtgtgaggtgggtttgggttgaggttatgcct |
218 |
Q |
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| T |
6629967 |
tgattgtatacacttgcttggcttggggttttggggtctcaatgcgtag-ttttcgttggataggtgtgtgtgaggtgggtttgggttgaggttatgcct |
6629869 |
T |
|
| Q |
219 |
ttatcacgagtgatttgttcgttagttcgaggttttagggattcctttaggaatggtannnnnnnnccatgtcatcttttgtggtcttttaggttgtcta |
318 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6629868 |
ttatcacgagtggtttgttcgttagttcgaggttttagggattcctttaggaatggta--ttttttccatgtcatcttttgtggtcttttaggttgtcta |
6629771 |
T |
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| Q |
319 |
gcggttttttgactttcctacttccctttg |
348 |
Q |
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|||||||| ||||||||||||||||||||| |
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| T |
6629770 |
gcggttttgtgactttcctacttccctttg |
6629741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 6803627 - 6803297
Alignment:
| Q |
19 |
atttaatgaagataggccaacgctgattgacaaactcttagcgcatgagggttgtgatttagtgaaaaatgtgtgttttgggaatggatgaggtggttgt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | |||||||||||||||||| |
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| T |
6803627 |
atttaatgaagataggccaacgctgattgacaaactcttagcgcatgagggttgtgatttagtgaaaaatgtgcgttgtcgaaatggatgaggtggttgt |
6803528 |
T |
|
| Q |
119 |
tgattgtatacacttgcttggcttgggg---ttttggggtctcaatacgtagtttttcgttggataggtgtgtgtgaggtgggtttgggttgaggttatg |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
6803527 |
tgattgtatacacttgcttggcttggggtacttttggggtctcaatgcgtag-ttttcagtggataggagtgtgtgaggtgggtttgggttgaggttatg |
6803429 |
T |
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| Q |
216 |
cctttatcacgagtgatttgttcgttagttcgaggttttagggattcctttaggaatggtannnnnnnnccatgtcatcttttgtggtcttttaggttgt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6803428 |
gctttatcacgagtgatttgttcgttagttcgaggttttagcgattcttttaggaatggtattttttttccatgtcatcttttgtggtcttttaggttgt |
6803329 |
T |
|
| Q |
316 |
ctagcggttttttgactttcctacttcccttt |
347 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
6803328 |
ctagcggttttttgactttcctacttcccttt |
6803297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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