View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_50 (Length: 345)
Name: NF9303_low_50
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 39572255 - 39572563
Alignment:
| Q |
19 |
agaatcttgaaaggctagattttccaattttcctattgttagtctgatttggtattgggctatgaatccacagtatcttaatgcaatccataactgggac |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39572255 |
agaatcttgaaaggctagattttccaattttcctattgttagtctgatttggtattgggttatgaatccacagtatcttaatgcaatccataactgggac |
39572354 |
T |
|
| Q |
119 |
accaaaagtaatattagaataaccaaggtttttgtactaactaaaacccttgaatgctggcttccactacaccatcaataaaactagaaccctctgttgg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39572355 |
accaaaagtaatattagaataaccaaggtttttgtactaactaaaacccttgaatgctggcttccactacaccatcaataaaactagaaccctcagttgg |
39572454 |
T |
|
| Q |
219 |
cattcttatctaattaaactcactagttgtgataatgtacattaattattattagaaaacattgcaaaattttcctaccactcttcaagcttacaaaatc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39572455 |
cattcttatctaattaaactcactagttgtgataatgtacattaattattattagaaaacattgcaaaattttccta--------caagcttacaaaatc |
39572546 |
T |
|
| Q |
319 |
atagtctgtgtctctgc |
335 |
Q |
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||||||||||||||||| |
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| T |
39572547 |
atagtctgtgtctctgc |
39572563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 39562065 - 39562384
Alignment:
| Q |
19 |
agaatcttgaaaggctagattttccaattttcctattgttagtctgatttggtattgggctatgaatccacagtatcttaatgcaatccataactgggac |
118 |
Q |
| |
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||||||| |||||||| ||||||||||||| || ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39562065 |
agaatctcgaaaggctggattttccaatttggctcttgttagtctgatatggtattggtttatgaatccacagtatcttaatgcaatccataactgggac |
39562164 |
T |
|
| Q |
119 |
accaaaagtaatattagaataaccaaggtttttgtactaactaaaacccttgaatgctggcttccacta-ca-ccatcaataaaactagaaccctctgtt |
216 |
Q |
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|||||||||| |||||||||| ||||||||||||||| |||||| ||||||||||||| || | | || ||||||||||||||||||||||| ||| |
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| T |
39562165 |
cccaaaagtaacattagaataagcaaggtttttgtactgactaaagttcttgaatgctggcctcaattggcagccatcaataaaactagaaccctcagtt |
39562264 |
T |
|
| Q |
217 |
ggcattcttatctaattaaactcactagttgtgataatgtacattaattattattagaaaacattgcaaaattttcctaccactcttcaagcttacaaaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
39562265 |
ggcattcttatctaattaaactcactagttgtgataatgtacattaattattattagaaaacattgcaaaattttcctaccactcatcaagcttacagta |
39562364 |
T |
|
| Q |
317 |
tcatagtctgtgtctctgct |
336 |
Q |
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|||||||||||||||||| |
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| T |
39562365 |
atatagtctgtgtctctgct |
39562384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 39566744 - 39567060
Alignment:
| Q |
19 |
agaatcttgaaaggctagattttccaattttcctattgttagtctgatttggtattgggctatgaatccacagtatcttaatgcaatccataactgggac |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||| || |||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39566744 |
agaatctcgaaaggctagattttccaatttggctcttgttattctgatatggtattgggttatgaatccacagtatcttaatgcaatccataactgggac |
39566843 |
T |
|
| Q |
119 |
accaaaagtaatattagaataaccaaggtttttgtactaactaaaacccttgaatgctggcttccact-aca-ccatcaataaaactagaaccctctgtt |
216 |
Q |
| |
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|||||||||| |||||||||| ||||||||||||||| ||||||| |||||||||||| || | | ||| ||||||||||| |||||| |||| ||| |
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| T |
39566844 |
cccaaaagtaacattagaataagcaaggtttttgtactgactaaaattcttgaatgctggtatcaattgacagccatcaataaagctagaa-cctcagtt |
39566942 |
T |
|
| Q |
217 |
ggcattcttatctaattaaactcac-tagttgtgataatgtacattaattattattagaaaacat-tgcaaaattttcctaccactcttcaagcttacaa |
314 |
Q |
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|||||| |||||| ||||||||||| ||||||| |||||||||||| ||||| || |||||||| | | |||||||||||||||| | |||||||||| |
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|
| T |
39566943 |
ggcatttttatctgattaaactcacttagttgtaataatgtacatt-attat--tttgaaaacatgtacggaattttcctaccactcattaagcttacaa |
39567039 |
T |
|
| Q |
315 |
aatcatagtctgtgtctctgc |
335 |
Q |
| |
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| ||||||||||||||||| |
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|
| T |
39567040 |
atatatagtctgtgtctctgc |
39567060 |
T |
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