View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_51 (Length: 345)
Name: NF9303_low_51
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 50569955 - 50569609
Alignment:
| Q |
1 |
acttgaagtgcaagatacaaatgaaattgagagaaaataggtggtgatgcacaatttgttgtaatgtgtattctcattaagcaaatgaaggaatgattac |
100 |
Q |
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| T |
50569955 |
acttgaagtgcaagatacaaatgaaattgagagaaaataggtggtgatgcacaatttgttgtaatgtgtattctcattaagcaaatgaaggaatgattac |
50569856 |
T |
|
| Q |
101 |
aacttatagaaactaacttgctagctaagcaataacaaacttaactaactaactaact----gatttaattgattaattctctatacaccaccttattaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
50569855 |
aacttatagaaactaacttgctagctaagcaataacaaacttaactaactaactaactaactgatttaattgattaattctctatacaccaccttattaa |
50569756 |
T |
|
| Q |
197 |
tccataaatttaaaatgatacaattcctaacttctttcttggaaacacaaagctatcaatctttacagcctttgtaagtccatcagctagttgcaattca |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50569755 |
tccataaatttaaaatgatacaattcctaacttctttcttggaaacacaaagctatcaatctttacagcctttgtaagtccatcagctagttgcaattca |
50569656 |
T |
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| Q |
297 |
gtaggagaatattccacatcaattttccattcatcacttactctctg |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50569655 |
gtaggagaatattccacatcaattttccattcatcacttactctctg |
50569609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 43468176 - 43468257
Alignment:
| Q |
8 |
gtgcaagatacaaatgaaattgagagaaaataggtggtgatgcacaatttgttgtaatgtgtattctcattaagcaaatgaa |
89 |
Q |
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|||||||||||||||| |||| ||| |||| || |||||||| || |||||| ||||||||||||||||||||||||||| |
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| T |
43468176 |
gtgcaagatacaaatggaattaagaaaaaagagaaagtgatgcaaaaattgttgcaatgtgtattctcattaagcaaatgaa |
43468257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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