View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9303_low_56 (Length: 340)

Name: NF9303_low_56
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9303_low_56
NF9303_low_56
[»] chr2 (14 HSPs)
chr2 (13-283)||(44623924-44624196)
chr2 (17-137)||(44614737-44614857)
chr2 (198-323)||(44614858-44614987)
chr2 (118-203)||(39137894-39137979)
chr2 (98-199)||(39152579-39152680)
chr2 (98-199)||(39459256-39459357)
chr2 (116-178)||(39161864-39161926)
chr2 (116-178)||(39207268-39207330)
chr2 (100-178)||(39389096-39389174)
chr2 (97-199)||(39397787-39397889)
chr2 (95-199)||(39370109-39370213)
chr2 (237-280)||(39414622-39414665)
chr2 (199-250)||(39421698-39421749)
chr2 (98-147)||(39468343-39468392)
[»] chr8 (2 HSPs)
chr8 (93-250)||(45342049-45342206)
chr8 (242-283)||(45342230-45342271)
[»] chr6 (1 HSPs)
chr6 (98-178)||(16113303-16113383)
[»] chr7 (2 HSPs)
chr7 (248-280)||(19808027-19808059)
chr7 (125-203)||(19807851-19807929)
[»] chr5 (2 HSPs)
chr5 (242-280)||(17059656-17059694)
chr5 (207-248)||(17059589-17059630)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 283
Target Start/End: Original strand, 44623924 - 44624196
Alignment:
Q  13 gaagcaaaggtagaggaatttgaaggaaaaatgcagcaaattgaaaaccaaactgaggacaatctcaaatctgtcaaagcactcgagttaaaagagaatc 112  Q
    |||||||||| |||| |||| |||| ||||||||||||| ||||||| |||  ||||||||||||||||||||||||||||||||| |||||||||||||    
T  44623924 gaagcaaaggaagagaaattcgaagtaaaaatgcagcaatttgaaaatcaagttgaggacaatctcaaatctgtcaaagcactcgaattaaaagagaatc 44624023  T
Q  113 agattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaacaatttgatgaggaaaa 212  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||  |||||| |||||    
T  44624024 agattgaagtacaaatcaaggatcttaagtcaaagctgaataattttggtggacaaccaaaggagcttgagttgacagagaaacaacatgatgaagaaaa 44624123  T
Q  213 agaatttggtaaatgttgctattcatc--tattttattgatgttgatatttttaataacctgatctacatatt 283  Q
    |||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||| |||||| |||||    
T  44624124 agaatttggtaaatgttgctattcatctttcttttattgatgttgatatttttaataaccagatctatatatt 44624196  T

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Target: chr2; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 44614737 - 44614857
Alignment:
Q  17 caaaggtagaggaatttgaaggaaaaatgcagcaaattgaaaaccaaactgaggacaatctcaaatctgtcaaagcactcgagttaaaagagaatcagat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614737 caaaggtagaggaatttgaaggaaaaatgcagcaaattgaaaaccaaactgaggacaatctcaaatctgtcaaagcactcgagttaaaagagaatcagat 44614836  T
Q  117 tgaagtacaaatcaaggatct 137  Q
    |||||||||||||||||||||    
T  44614837 tgaagtacaaatcaaggatct 44614857  T

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Target: chr2; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 198 - 323
Target Start/End: Original strand, 44614858 - 44614987
Alignment:
Q  198 atttgatgaggaaaaagaatttggtaaatgttgctattcatctattttattgatgttgatatttttaataacctgatctacatattt----nnnnnnnnt 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |    
T  44614858 atttgatgaggaaaaagaatttggtaaatgttgctattcatctattttattgatgttgatatttttaataacctgatctacatatttaaaaaaaataaat 44614957  T
Q  294 aataatttaatgatgttaatgcagtacttg 323  Q
    ||||||||||||||||||||||||||||||    
T  44614958 aataatttaatgatgttaatgcagtacttg 44614987  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 39137894 - 39137979
Alignment:
Q  118 gaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaacaatttga 203  Q
    |||| ||| |||||||||| ||  ||||||||| |||| |||| ||||||| | ||||||| ||| ||||||||||||||||||||    
T  39137894 gaaggacagatcaaggatcctggttcaaagctggataaatttgatggacaattgaaggagcctgaactgacagagaaacaatttga 39137979  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 39152579 - 39152680
Alignment:
Q  98 agttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaaca 197  Q
    ||||||||||||| ||| |||||||| ||  ||||||||||||||||||||| |||||   || ||||||    ||||||| |||| |||||||||||||    
T  39152579 agttaaaagagaagcagcttgaagtagaagccaaggatcttgagtcaaagctaaataaacatgatggacagtcgaaggagcatgatttgacagagaaaca 39152678  T
Q  198 at 199  Q
    ||    
T  39152679 at 39152680  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 39459256 - 39459357
Alignment:
Q  98 agttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaaca 197  Q
    |||||||||| || ||  |||||| |||| |||||||||  ||||||||||| |||||||||| ||||||| | ||||||| |||  |||||| ||||||    
T  39459256 agttaaaagacaagcaatttgaaggacaagtcaaggatccagagtcaaagcttaataattttgatggacaagtgaaggagcctgagttgacagtgaaaca 39459355  T
Q  198 at 199  Q
    ||    
T  39459356 at 39459357  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 39161864 - 39161926
Alignment:
Q  116 ttgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagc 178  Q
    |||||| |||| ||||||||| | |||||||| ||||||| |||| |||||||||||||||||    
T  39161864 ttgaaggacaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagc 39161926  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 39207330 - 39207268
Alignment:
Q  116 ttgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagc 178  Q
    |||||| |||| ||||||||| | |||||||| ||||||| |||| |||||||||||||||||    
T  39207330 ttgaaggacaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagc 39207268  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 178
Target Start/End: Complemental strand, 39389174 - 39389096
Alignment:
Q  100 ttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagc 178  Q
    |||||||| || ||| ||||||  ||| |||| |||| |||||||||||||||||| |||| ||||||| |||||||||    
T  39389174 ttaaaagaaaagcagtttgaagggcaagtcaacgatcctgagtcaaagctgaataaatttgatggacaaataaaggagc 39389096  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 39397889 - 39397787
Alignment:
Q  97 gagttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaac 196  Q
    |||||||||||||| ||| ||| ||  | | ||||||| |||||||||| |||| |||| |||| ||||||||| ||||||| |||  |||||| |||||    
T  39397889 gagttaaaagagaagcaggttgcaggtcgagtcaaggaacttgagtcaaggctggataaatttgatggacaactgaaggagcctgagttgacagggaaac 39397790  T
Q  197 aat 199  Q
    |||    
T  39397789 aat 39397787  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 39370109 - 39370213
Alignment:
Q  95 tcgagttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaa 194  Q
    |||| ||||||||||| ||| ||| |  |||| |||||| ||||||||||||| ||||||| || | ||||||||||||| ||| |||   |||| ||||    
T  39370109 tcgaattaaaagagaagcagtttggaagacaagtcaagggtcttgagtcaaagatgaataaattggatggacaactaaagaagcctgagtcgacaaagaa 39370208  T
Q  195 acaat 199  Q
    |||||    
T  39370209 acaat 39370213  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 280
Target Start/End: Complemental strand, 39414665 - 39414622
Alignment:
Q  237 atctattttattgatgttgatatttttaataacctgatctacat 280  Q
    ||||| |||| ||||||||||||||||||||| |||||||||||    
T  39414665 atctagtttaatgatgttgatatttttaataatctgatctacat 39414622  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 39421749 - 39421698
Alignment:
Q  199 tttgatgaggaaaaagaatttggtaaatgttgctattcatctattttattga 250  Q
    |||||||||||||| |||| |||||||||||  |||||||||| ||||||||    
T  39421749 tttgatgaggaaaatgaatctggtaaatgttcttattcatctaatttattga 39421698  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 39468343 - 39468392
Alignment:
Q  98 agttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaag 147  Q
    ||||||||||||| |||||||||| |||| ||||||| ||| ||||||||    
T  39468343 agttaaaagagaagcagattgaaggacaagtcaaggaacttcagtcaaag 39468392  T

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Target: chr8 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 93 - 250
Target Start/End: Original strand, 45342049 - 45342206
Alignment:
Q  93 actcgagttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagag 192  Q
    |||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| | ||||||| |||||||||||||  ||||| ||    
T  45342049 actccagttaaaagagaatcagtttgaagtgcaaatcaaggaccttgagtcaaagctgaataatttggatggacaaataaaggagcttgagttgacaaag 45342148  T
Q  193 aaacaatttgatgaggaaaaagaatttggtaaatgttgctattcatctattttattga 250  Q
    |||||||  ||||||||||||||||||||||||  ||| |||||||||| ||||||||    
T  45342149 aaacaatacgatgaggaaaaagaatttggtaaaatttgttattcatctagtttattga 45342206  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 45342230 - 45342271
Alignment:
Q  242 ttttattgatgttgatatttttaataacctgatctacatatt 283  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  45342230 ttttgttgatgttgatatttttaataacctgatctacatatt 45342271  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 16113303 - 16113383
Alignment:
Q  98 agttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagc 178  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||  | ||||| |||||||| |||||||    
T  16113303 agttaaaagagaagcagattgaagtacaagtcaaggagcttgagtcaaagctgaacgaatttggcggacaactgaaggagc 16113383  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 280
Target Start/End: Original strand, 19808027 - 19808059
Alignment:
Q  248 tgatgttgatatttttaataacctgatctacat 280  Q
    |||||||||||||||||||||||||||||||||    
T  19808027 tgatgttgatatttttaataacctgatctacat 19808059  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 19807851 - 19807929
Alignment:
Q  125 aaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaacaatttga 203  Q
    |||||||||||| ||  ||||||||| |||| |||| ||||||| | ||||||  |||  |||||||||||||||||||    
T  19807851 aaatcaaggatcctggttcaaagctggataaatttgatggacaattgaaggagtctgagttgacagagaaacaatttga 19807929  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 17059656 - 17059694
Alignment:
Q  242 ttttattgatgttgatatttttaataacctgatctacat 280  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  17059656 ttttattgatgttgctatttttaatatcctgatctacat 17059694  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 17059589 - 17059630
Alignment:
Q  207 ggaaaaagaatttggtaaatgttgctattcatctattttatt 248  Q
    |||||| ||||||||||||||||| |||||||||| ||||||    
T  17059589 ggaaaatgaatttggtaaatgttgttattcatctagtttatt 17059630  T

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