View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_58 (Length: 335)
Name: NF9303_low_58
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 319
Target Start/End: Complemental strand, 23322640 - 23322321
Alignment:
| Q |
7 |
ggacattgaaaaatgcaaaacccaaagaagtttacaaatgtagttacatattaccgggtggggattctctccggtgaacttttcaccggatgcagtccag |
106 |
Q |
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| T |
23322640 |
ggacattgaaaaatgcaaaatccaaagaagtttacaaatgtacttacatattatcgattggggattctctccagtgaacttttcactggatgcagtctag |
23322541 |
T |
|
| Q |
107 |
tgtaaatcttcaccatccaataactctttaattattttgaccaagtcaaatggaga-------aaaatgtgtggctttgattccaatgcactctctgatc |
199 |
Q |
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| T |
23322540 |
tgtaaatcttcaccatccaatggctctttaattattttgaccaagtcaaatagaaagaaaaaaaaaacgtgtggttttgattccaatgcactttccggtc |
23322441 |
T |
|
| Q |
200 |
acttgagacaatctgctccccatattaccgaccaacaggcgccctcatatcactgaacatgattctaatatgcatctttttgagatattagttgaatact |
299 |
Q |
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| T |
23322440 |
atttgagacaatctgctccccatactaccgaccaacaggcgccctcatatcactgaacatgattctaatatgcatctttttgagatattagttgaatact |
23322341 |
T |
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| Q |
300 |
tatcaatagaacaaacttta |
319 |
Q |
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|||||||||||||||||||| |
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| T |
23322340 |
tatcaatagaacaaacttta |
23322321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 52046179 - 52046291
Alignment:
| Q |
72 |
tctctccggtgaacttttcaccggatgcagtccagtgtaaatcttcaccatccaataactctttaattattttgaccaagtcaaatggagaaaaatgtgt |
171 |
Q |
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| T |
52046179 |
tctctccggtgaactgttcactggatgtggtgcggtgtaaatctttatcattcaatagttatttaatgatcttgaccaagtcaagtagaggaaaatgtgt |
52046278 |
T |
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| Q |
172 |
ggctttgattcca |
184 |
Q |
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|||| |||||||| |
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| T |
52046279 |
ggctgtgattcca |
52046291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 1283615 - 1283492
Alignment:
| Q |
72 |
tctctccggtgaacttttc-accggatgcagtccagtgtaaatcttc-accatccaataactctttaattattttgaccaagtcaaatggagaaaaatgt |
169 |
Q |
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|||||||||||||||||| || | || ||||||| ||||||||| | |||||||||| | ||| || ||||| |||||||||| | ||| ||||||| |
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| T |
1283615 |
tctctccggtgaacttttttactgaatacagtccattgtaaatctcctaccatccaatggttatttgatgatttttaccaagtcaagtagaggaaaatgt |
1283516 |
T |
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| Q |
170 |
gtggctttgattccaatgcactct |
193 |
Q |
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| T |
1283515 |
gtggttgtgattccactgcactct |
1283492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 219
Target Start/End: Complemental strand, 3972674 - 3972556
Alignment:
| Q |
101 |
gtccagtgtaaatcttcaccatccaataactctttaattattttgaccaagtcaaatggagaaaaatgtgtggctttgattccaatgcactctctgatca |
200 |
Q |
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|||||||||||||||||||||||||||| || |||||| || |||| |||||||| | ||| ||||||||||||| |||||||| || |||||| | ||| |
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| T |
3972674 |
gtccagtgtaaatcttcaccatccaatagctatttaatgatcttgatcaagtcaagtagaggaaaatgtgtggctgtgattccactgaactctccggtca |
3972575 |
T |
|
| Q |
201 |
cttgagacaatctgctccc |
219 |
Q |
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| T |
3972574 |
ccggagacaatatgctccc |
3972556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 194
Target Start/End: Complemental strand, 39934284 - 39934155
Alignment:
| Q |
65 |
tggggattctctccggtgaacttttcaccggatgcagtccagtgtaaatcttcaccatccaataactctttaattattttgaccaagtcaaatggagaaa |
164 |
Q |
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|||||||||||||| |||| |||||| |||| ||||||||||| ||||| |||||| ||| | || ||| |||||||| ||||||| || ||||| |
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| T |
39934284 |
tggggattctctccaatgaatttttcattggatacagtccagtgtcaatctccaccatttaatggtttttcaataattttgactaagtcaattgtagaaa |
39934185 |
T |
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| Q |
165 |
aatgtgtggctttgattccaatgcactctc |
194 |
Q |
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||| || || | | |||||| ||||||||| |
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| T |
39934184 |
aatatggggttattattccactgcactctc |
39934155 |
T |
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