View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_6 (Length: 579)
Name: NF9303_low_6
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 13 - 568
Target Start/End: Original strand, 51405773 - 51406327
Alignment:
| Q |
13 |
caaaggaatgatggtggttatttatatggtttatatgtactttatgtatatataaatgaaatgaaggtgactttggaagctttcagagcaagactatact |
112 |
Q |
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| T |
51405773 |
caaaggaatgatggtggttatttatatggtttatatgtactttatgtatatataaatgaaatgaaggtgactttggaagctttcagagcaagactatact |
51405872 |
T |
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| Q |
113 |
atactggcggaattagacactttattagtctatatccgtgacattttaaagttgttggatatttatatcgcattattgtaccccagacaatgtatggttt |
212 |
Q |
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| T |
51405873 |
atactggcggaattagacactttattagtctatatccgtgacattttaaagttgttggatatttatatcgcattattgtaccc-agacaatgtatggttt |
51405971 |
T |
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| Q |
213 |
gaattttatatatcattgtttacaaaattcatgttttactattttattttggtgcccaaacctgttcttgcatatttcactcgtaaaagtaaagagatat |
312 |
Q |
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| T |
51405972 |
gaattttatatatcattgtttacaaaattcatgttttactattttattttggtgcccaaacttgttcttgcatatttcactcgtaaaagtaaagagatat |
51406071 |
T |
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| Q |
313 |
gaacattttctctaacactcactcttttattattatttgaaattattgtagagtcaacactttagagttgaagaaaatgtcaaaaagagaaagagattgt |
412 |
Q |
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| T |
51406072 |
gaacattttctctaacactcactcttttattattatttgaaattattgtagagtctccactttagagttgaagaaaatgtcaaaaagagaaagagattgt |
51406171 |
T |
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| Q |
413 |
tgttatcatttcacatggagaaaatgaggaaatttaaatccattgaaaacctctagcatttaggttgatgtgttgactctttgtattttgacaactgaac |
512 |
Q |
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| T |
51406172 |
tgttatcatttcacatggagaaaatgaggaaatttaaatccattgaaaacctctagcatataggttgatgtgttgactctttgtattttgacaactgaac |
51406271 |
T |
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| Q |
513 |
tcatatccattaagtgcatgcaaacacatgtctatgatgagtagagtaaaaacctg |
568 |
Q |
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| T |
51406272 |
tcatatccattaagtgcatgcaaacacatgtctatgatgagtagagtaaaaacctg |
51406327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 343
Target Start/End: Complemental strand, 13070101 - 13070070
Alignment:
| Q |
312 |
tgaacattttctctaacactcactcttttatt |
343 |
Q |
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| T |
13070101 |
tgaacattttctctaacactcactcttttatt |
13070070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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