View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_62 (Length: 329)
Name: NF9303_low_62
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_62 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 36551674 - 36551979
Alignment:
| Q |
1 |
acacaccattatatagcaatgttaatgtgtgatgtttggtgatgatacgtaccaagtaatgtaagatttaaagagtgtaatacggagaagaaaatttatt |
100 |
Q |
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| T |
36551674 |
acacaccattatatagcaatgttaatgtgtgatgtttggtgatgatacgtaccaagtaatgtaagatttaaagagtgtaatacggagaagaaaatttatt |
36551773 |
T |
|
| Q |
101 |
gcctttaatggcaatttcaactttagctaggctgcagaagtggggtttcgtagaaattaaaatactgttggtgggcatgtgcacaaatgcattgtttaat |
200 |
Q |
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| T |
36551774 |
gcctttaatggcaatttcaactttagctaggctgcagaagtggggttttgtagaaattaaaatactgttggtgggcatgtgcacaaatgcattgtttaat |
36551873 |
T |
|
| Q |
201 |
taatattggtctattcttgtcgttaaatattgacctcattttgtatactagattattggcctcgttaggtagggagagataacagaatataaacgtggtt |
300 |
Q |
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| T |
36551874 |
taatattggtctattcttgtcgttaaatattgacctcattttggatactagattattggcctcgttaggtagggagagataacagaatataaacgtggtt |
36551973 |
T |
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| Q |
301 |
aaaaat |
306 |
Q |
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|||||| |
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| T |
36551974 |
aaaaat |
36551979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 36549002 - 36549167
Alignment:
| Q |
19 |
atgttaatgtgtgatgtttggtgatgatacgtaccaagtaatgtaagatttaaagagtgtaatacggagaagaaaatttattgcctttaatggcaatttc |
118 |
Q |
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|||||||||||||| |||| |||||||||||||||||||| | |||| |||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
36549002 |
atgttaatgtgtgaatgttggcgatgatacgtaccaagtaatagaggatt-aaagagtgtaatacggagaagaaa-tttattgcctttaatggtaatttc |
36549099 |
T |
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| Q |
119 |
aactttagctaggctgcagaagtggggtttcgtagaaattaaaatactgttggtgggcatgtgcacaaa |
187 |
Q |
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| T |
36549100 |
aactttagctatgcttcagaagtggggttttgtagaaattaaaa-attgttgtttagcatgtgcacaaa |
36549167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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