View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_67 (Length: 320)
Name: NF9303_low_67
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_67 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 54396573 - 54396870
Alignment:
| Q |
18 |
aggacaagctttggtctccccttttgtgggttcaaattcacattgatcaattatgtctttcatgtcttcaccttggggggaatcttttgtgagagagaat |
117 |
Q |
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| T |
54396573 |
aggacaagctttggtctccccttttgtgggttcaaattcacattgatcaattatgtctttcatgtcttcaccttggggggaatcttttgtgagagagaag |
54396672 |
T |
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| Q |
118 |
atttgaagaaggcttggtagttgtgacttggagaaaggaatgtagtcagctacnnnnnnnggcaagaagttagcatattctctgataggaaattgcagcg |
217 |
Q |
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| T |
54396673 |
agttgaagaaggcttggtagttgtgacttggagaaaggaatgtagtcagctactttttttggcaagaagttagcatattctctgacaggaaattgcagcg |
54396772 |
T |
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| Q |
218 |
tcattacgttccctacataaagatcatccatagtgaaaaaatctaacttgaatgcctctgtatggtcaactttagaagatggtttcccctttgcttct |
315 |
Q |
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| T |
54396773 |
tcattacgttccctacataaagatcatccatagtgaaaaaagctaacttgaatgcctctgtatggtcaactttagaagatggtttcccttttgattct |
54396870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 54381690 - 54381973
Alignment:
| Q |
19 |
ggacaagctttggtctccccttttgtgggttcaaattcacattgatcaattatgtctttcatgtcttcaccttggggggaatcttttgtgagagagaata |
118 |
Q |
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| T |
54381690 |
ggacaggccttggtctccccttttgtgggttcaaactcacattgatcaattatgtctttcatatcttcaccttggggagagtcttttgtgagtgagaata |
54381789 |
T |
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| Q |
119 |
tttgaagaaggcttggtagttgtgacttggagaaaggaatgtagtcagctacnnnnnnnggcaagaagttagcatattctctgataggaaattgcagcgt |
218 |
Q |
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| T |
54381790 |
gttgaagaaggctaggtagttgcgacttggagagaggaatgtagtcagctacttttcttggcaagaagcgagcatattctctgataggaaattgcagggt |
54381889 |
T |
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| Q |
219 |
cattacgttccctacataaagatcatccatagtgaaaaaatctaacttgaatgcctctgtatggtcaactttagaagatggttt |
302 |
Q |
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| T |
54381890 |
cattacattccctacgtaaagatcatccagagtaaaaaaagctaacttgaatgcctctgtatggtcaactttagaagatagttt |
54381973 |
T |
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