View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9303_low_68 (Length: 319)

Name: NF9303_low_68
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9303_low_68
NF9303_low_68
[»] chr2 (4 HSPs)
chr2 (21-319)||(3220145-3220441)
chr2 (21-172)||(12504720-12504871)
chr2 (21-172)||(14681055-14681206)
chr2 (176-319)||(15985303-15985443)
[»] scaffold0014 (2 HSPs)
scaffold0014 (23-172)||(143719-143868)
scaffold0014 (21-172)||(173513-173664)
[»] chr3 (3 HSPs)
chr3 (28-172)||(55488644-55488788)
chr3 (21-172)||(38327829-38327980)
chr3 (21-172)||(46073352-46073501)
[»] chr8 (4 HSPs)
chr8 (21-172)||(44197897-44198048)
chr8 (21-167)||(20793444-20793590)
chr8 (21-172)||(23929103-23929254)
chr8 (175-307)||(23729278-23729406)
[»] chr7 (4 HSPs)
chr7 (21-172)||(48513570-48513721)
chr7 (21-172)||(48728012-48728163)
chr7 (28-172)||(3718371-3718514)
chr7 (21-139)||(42105178-42105296)
[»] chr6 (1 HSPs)
chr6 (21-172)||(29651774-29651925)
[»] chr5 (4 HSPs)
chr5 (21-172)||(36662526-36662677)
chr5 (21-172)||(36679101-36679252)
chr5 (34-172)||(23203962-23204100)
chr5 (28-121)||(43560199-43560291)
[»] chr1 (3 HSPs)
chr1 (21-172)||(52609148-52609299)
chr1 (21-167)||(52887707-52887853)
chr1 (32-167)||(29886958-29887093)
[»] scaffold1284 (1 HSPs)
scaffold1284 (28-121)||(143-235)
[»] scaffold0318 (1 HSPs)
scaffold0318 (34-172)||(19955-20093)
[»] chr4 (1 HSPs)
chr4 (33-127)||(56288686-56288780)


Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 21 - 319
Target Start/End: Complemental strand, 3220441 - 3220145
Alignment:
Q  21 cgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccatt 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3220441 cgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgtttttgtttcgcgaagaacaccttcgacttgttgcttccatt 3220342  T
Q  121 gaaggtagttcatatcatcaagcttaacataaactactcgtttgaagcttttaacaaatcacttgtcaatactgtgactgactgagctggcaatagtctc 220  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220341 gaaggtagttcatatcatcaagcttaacataaactactcgttt--agcttttaacaaatcacttgtcaatactgtgactgactgagctggcaatagtctc 3220244  T
Q  221 acttaggacaggacttgcttatttgagggatcgaccttgattactacttaaaaagaccaaagcagaggagttatcaggttcatgatatgatgcacatct 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220243 acttaggacaggacttgcttatttgagggatcgaccttgattactacttaaaaagaccaaagcagaggagttatcaggttcatgatatgatgcacatct 3220145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 12504871 - 12504720
Alignment:
Q  21 cgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccatt 120  Q
    |||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||    
T  12504871 cgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccatt 12504772  T
Q  121 gaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 172  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  12504771 gaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 12504720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 14681055 - 14681206
Alignment:
Q  21 cgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccatt 120  Q
    |||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||    
T  14681055 cgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccatt 14681154  T
Q  121 gaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 172  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  14681155 gaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 14681206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 176 - 319
Target Start/End: Original strand, 15985303 - 15985443
Alignment:
Q  176 aaatcacttgtcaatactgtgactgactgagctggcaatagtctcacttaggacaggacttgcttatttgagggatcgacc-ttgattactacttaaaaa 274  Q
    ||||||||||||||||||||| ||||    ||||||||| ||| ||||||||||| ||||||||||||||||||||| ||| ||||||||||||| || |    
T  15985303 aaatcacttgtcaatactgtggctga----gctggcaatcgtcacacttaggacaagacttgcttatttgagggatcaacctttgattactacttcaaga 15985398  T
Q  275 gaccaaagcagaggagttatcaggttcatgatatgatgcacatct 319  Q
    |  |||| ||||||||||||||||| |||||||||||||||||||    
T  15985399 gttcaaatcagaggagttatcaggtgcatgatatgatgcacatct 15985443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 23 - 172
Target Start/End: Complemental strand, 143868 - 143719
Alignment:
Q  23 cgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattga 122  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||    
T  143868 cgctgcatctgtgagataaaccgatggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccattga 143769  T
Q  123 aggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 172  Q
    ||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  143768 aggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 143719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 173664 - 173513
Alignment:
Q  21 cgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccatt 120  Q
    |||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||    
T  173664 cgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccatt 173565  T
Q  121 gaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 172  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  173564 gaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 173513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 28 - 172
Target Start/End: Complemental strand, 55488788 - 55488644
Alignment:
Q  28 catctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggta 127  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||    
T  55488788 catctgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccattgaaggta 55488689  T
Q  128 gttcatatcatcaagcttaacataaactactcgtttgaagctttt 172  Q
    |||| ||||||||||||||| | |||||||| |||||||| ||||    
T  55488688 gttcgtatcatcaagcttaatagaaactacttgtttgaaggtttt 55488644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 38327829 - 38327980
Alignment:
Q  21 cgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccatt 120  Q
    |||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||    
T  38327829 cgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccatt 38327928  T
Q  121 gaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 172  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  38327929 gaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 38327980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 46073501 - 46073352
Alignment:
Q  21 cgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccatt 120  Q
    |||||| |||||||||||||||||  |||||||| |||||||||||||||||||| | | |||||| ||||||||||||||||||||||||| |||||||    
T  46073501 cgcgctgcatctgtgagataaacc--tggaatctcaggtgaaatcacaaatttcaacatcttcgttccgcgaagaacaccttcgacttgttgtttccatt 46073404  T
Q  121 gaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 172  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  46073403 gaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 46073352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 44198048 - 44197897
Alignment:
Q  21 cgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccatt 120  Q
    |||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||    
T  44198048 cgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccatt 44197949  T
Q  121 gaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 172  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  44197948 gaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 44197897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 21 - 167
Target Start/End: Complemental strand, 20793590 - 20793444
Alignment:
Q  21 cgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccatt 120  Q
    |||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||    
T  20793590 cgcgctgcatctgtgagataaacctgtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccatt 20793491  T
Q  121 gaaggtagttcatatcatcaagcttaacataaactactcgtttgaag 167  Q
    ||||||||||  ||||||||||||||||| |||||||| ||||||||    
T  20793490 gaaggtagtttgtatcatcaagcttaacagaaactacttgtttgaag 20793444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 23929103 - 23929254
Alignment:
Q  21 cgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccatt 120  Q
    |||||| ||||||||||||||| | ||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||| ||||||||||||||||    
T  23929103 cgcgctgcatctgtgagataaatcagtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcaacttgttgcttccatt 23929202  T
Q  121 gaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 172  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  23929203 gaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 23929254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 175 - 307
Target Start/End: Complemental strand, 23729406 - 23729278
Alignment:
Q  175 caaatcacttgtcaatactgtgactgactgagctggcaatagtctcacttaggacaggacttgcttatttgagggatcgaccttgattactacttaaaaa 274  Q
    ||||||||||||||||||||||   | | ||||||||||||||| |||||||||||| ||||||||||||||| |||| || ||| |||| |||  || |    
T  23729406 caaatcacttgtcaatactgtg---gtc-gagctggcaatagtcacacttaggacagaacttgcttatttgagagatcaacattggttaccactgtaaga 23729311  T
Q  275 gaccaaagcagaggagttatcaggttcatgata 307  Q
    |||||| ||| |||||| | ||||| |||||||    
T  23729310 gaccaaggcataggagtcaccaggtgcatgata 23729278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 48513570 - 48513721
Alignment:
Q  21 cgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccatt 120  Q
    |||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||    
T  48513570 cgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccatt 48513669  T
Q  121 gaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 172  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  48513670 gaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 48513721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 48728012 - 48728163
Alignment:
Q  21 cgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccatt 120  Q
    |||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||||||| |||||||    
T  48728012 cgcgctgcatgtgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgtttccatt 48728111  T
Q  121 gaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 172  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  48728112 gaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 48728163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 28 - 172
Target Start/End: Original strand, 3718371 - 3718514
Alignment:
Q  28 catctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggta 127  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| |||| |||||||||||||||||||||||||||| ||||||    
T  3718371 catctgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcg-agaacaccttcgacttgttgcttccattaaaggta 3718469  T
Q  128 gttcatatcatcaagcttaacataaactactcgtttgaagctttt 172  Q
    |||  ||||||||||||| ||| |||||| | |||||||| ||||    
T  3718470 gtttgtatcatcaagcttgacagaaactagttgtttgaaggtttt 3718514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 42105296 - 42105178
Alignment:
Q  21 cgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccatt 120  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| | |||||||||||||| ||||||||||||||||    
T  42105296 cgcgctgcatctgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccacgaagaacaccttcaacttgttgcttccatt 42105197  T
Q  121 gaaggtagttcatatcatc 139  Q
    ||||||||||| |||||||    
T  42105196 gaaggtagttcgtatcatc 42105178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 29651925 - 29651774
Alignment:
Q  21 cgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccatt 120  Q
    |||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||    
T  29651925 cgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccatt 29651826  T
Q  121 gaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 172  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  29651825 gaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 29651774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 36662677 - 36662526
Alignment:
Q  21 cgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccatt 120  Q
    |||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||    
T  36662677 cgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccatt 36662578  T
Q  121 gaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 172  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  36662577 gaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 36662526  T

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Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 36679101 - 36679252
Alignment:
Q  21 cgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccatt 120  Q
    |||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||    
T  36679101 cgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccatt 36679200  T
Q  121 gaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 172  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  36679201 gaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 36679252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 34 - 172
Target Start/End: Original strand, 23203962 - 23204100
Alignment:
Q  34 tgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcat 133  Q
    ||||||||||||||||||||| |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  23203962 tgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccattgaaggtagttcgt 23204061  T
Q  134 atcatcaagcttaacataaactactcgtttgaagctttt 172  Q
    || ||||||||||||| ||| |||| |||||||| ||||    
T  23204062 ataatcaagcttaacagaaagtacttgtttgaaggtttt 23204100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 43560291 - 43560199
Alignment:
Q  28 catctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattg 121  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||| | |||||| |||||||||||||||||| |||||||||||||||    
T  43560291 catctgtgagataaaccggtggaatctcaggtgaaatcgcaaatttcaccatcttcgttccgcgaagaacaccttcga-ttgttgcttccattg 43560199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 52609148 - 52609299
Alignment:
Q  21 cgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccatt 120  Q
    |||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||    
T  52609148 cgcgctgcatctgtgagaaaaaccggtggaatatcaggtgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgcttccatt 52609247  T
Q  121 gaaggtagttcatatcatcaagcttaacataaactactcgtttgaagctttt 172  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  52609248 gaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaaggtttt 52609299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 21 - 167
Target Start/End: Complemental strand, 52887853 - 52887707
Alignment:
Q  21 cgcgcttcatctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccatt 120  Q
    |||||| || |||||||||||||||||||||||| |||||||||||||||||||||| | ||| || |||||||||||||||||||||||||||||||||    
T  52887853 cgcgctgcaactgtgagataaaccggtggaatctcaggtgaaatcacaaatttcaccatcttcattccgcgaagaacaccttcgacttgttgcttccatt 52887754  T
Q  121 gaaggtagttcatatcatcaagcttaacataaactactcgtttgaag 167  Q
    ||||||||||| ||||||||||||||||| |||||||| ||||||||    
T  52887753 gaaggtagttcgtatcatcaagcttaacagaaactacttgtttgaag 52887707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 32 - 167
Target Start/End: Complemental strand, 29887093 - 29886958
Alignment:
Q  32 tgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttc 131  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||| | |||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  29887093 tgtgagataaaccggtggaatctcaggcgaaatcacaaatttcaccatcttcgttccgcgaagaacaccttcgacttgttgtttccattgaaggtagttc 29886994  T
Q  132 atatcatcaagcttaacataaactactcgtttgaag 167  Q
     ||||||||||||||||| |||||||| ||||||||    
T  29886993 gtatcatcaagcttaacagaaactacttgtttgaag 29886958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1284 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold1284
Description:

Target: scaffold1284; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 235 - 143
Alignment:
Q  28 catctgtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattg 121  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||| | |||||| |||||||||||||||||| |||||||||||||||    
T  235 catctgtgagataaaccggtggaatctcaggtgaaatcgcaaatttcaccatcttcgttccgcgaagaacaccttcga-ttgttgcttccattg 143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 172
Target Start/End: Original strand, 19955 - 20093
Alignment:
Q  34 tgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggtagttcat 133  Q
    ||||||||||||||||||| || || |||| || |||||||||| ||||  || | || |  |||||||| ||||| ||||||||||  ||||||||       
T  19955 tgagataaaccggtggaatttgtggagaaaccataaatttcaccatttttcttcctcgcaacacaccttctacttgctgcttccattagaggtagtttga 20054  T
Q  134 atcatcaagcttaacataaactactcgtttgaagctttt 172  Q
    ||||| |||||| ||| |||||||  |||||||| ||||    
T  20055 atcatgaagcttcacaaaaactacctgtttgaaggtttt 20093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 56288686 - 56288780
Alignment:
Q  33 gtgagataaaccggtggaatctgaggtgaaatcacaaatttcaccgttttcgtttcgcgaagaacaccttcgacttgttgcttccattgaaggta 127  Q
    |||||||| |||||||||||||| || ||||  |||  ||||||| | |||||  |||| | ||| |||||||| ||||| ||||||||||||||    
T  56288686 gtgagatacaccggtggaatctgcggcgaaacgacatgtttcaccatcttcgtaccgcgcaaaactccttcgacctgttgtttccattgaaggta 56288780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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