View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_70 (Length: 319)
Name: NF9303_low_70
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_70 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 304
Target Start/End: Complemental strand, 9237762 - 9237465
Alignment:
| Q |
7 |
ttggtggtgtccccattaacaatcctaatataaaggttttgctttggggtgttgttgactgtgttcacgagatcgcagacgagttgttgatgtatttggg |
106 |
Q |
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| T |
9237762 |
ttggtggtgtccccattaacaatcctaatatgaaggttttgcttcggggtgttgttgactgtgttcacgagatcgcagacgagttgttgatgtatttgga |
9237663 |
T |
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| Q |
107 |
tttgagtatgaattgggacactgccaaggggatttcgtacaaagttgttttggattttgttaaattttgtggccctttgaggatgggatttgccgaggag |
206 |
Q |
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| T |
9237662 |
tttgagtatgaattgggacactgccaaggggatttcgtacaaagttgttttggattttgttaaattctgtggccctttgaggatgggatttgccgaggag |
9237563 |
T |
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| Q |
207 |
caagcaacatccgatgaatctttgaattatgatatttgctatgaggaggatcccttgcttttaggagtacctgatcaacttcatattgtatttattaa |
304 |
Q |
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| T |
9237562 |
caagcaacatccgatgaatctttgaattatgatatttgctatgaggaggatcccttgttttcaggagtacctgatcaacttcatattgtatttattaa |
9237465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 27 - 304
Target Start/End: Complemental strand, 9250266 - 9249998
Alignment:
| Q |
27 |
aatcctaatataaaggttttgctttggggtgttgttgactgtgttcacgagatcgcagacgagttgttgatgtatttgggtttgagtatgaattgggaca |
126 |
Q |
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| T |
9250266 |
aatcctaaaatgaaggttttgcttcggggtgtttttgactgtgttcgagagatcacagatgagctgttgaggtttttggatttgagtatgaattttccca |
9250167 |
T |
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| Q |
127 |
ctgccaaggggatttcgtacaaagttgttttggattttgttaaattttgtggccctttgaggatgggatttgccgaggagcaagcaacatccgatgaatc |
226 |
Q |
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| T |
9250166 |
ctaaaagggggctttcgtacaaagttgtttttgattttgttaaattctgttgccctttgaggatgggattcgccaaggagcaagcaacatc--------- |
9250076 |
T |
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| Q |
227 |
tttgaattatgatatttgctatgaggaggatcccttgcttttaggagtacctgatcaacttcatattgtatttattaa |
304 |
Q |
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| T |
9250075 |
tttgaattgtgatatttgctatgaggaggatcccttgtttttaggagtgcctgatcaacttcatattgtatttattaa |
9249998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 46 - 304
Target Start/End: Complemental strand, 9258318 - 9258060
Alignment:
| Q |
46 |
tgctttggggtgttgttgactgtgttcacgagatcgcagacgagttgttgatgtatttgggtttgagtatgaattgggacactgccaaggggatttcgta |
145 |
Q |
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| T |
9258318 |
tgcttcggggtgtttttgactgtgttcacgagatcgcagatgagttgttgaggtttttggatctgagtatgaactgtcccacgggtgaggggttttcgtt |
9258219 |
T |
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| Q |
146 |
caaagttgttttggattttgttaaattttgtggccctttgaggatgggatttgccgaggagcaagcaacatccgatgaatctttgaattatgatatttgc |
245 |
Q |
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| T |
9258218 |
caactttgttttggattttgttaaattctctggccatttaaggatgggattggccgagcagcaagcaacatccgatgaatttttgaattgcactattggt |
9258119 |
T |
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| Q |
246 |
tatgaggaggatcccttgcttttaggagtacctgatcaacttcatattgtatttattaa |
304 |
Q |
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| T |
9258118 |
tacgaagaggaacccttgattgcaggagtagttgatcaacttcatattgtatttattaa |
9258060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 38 - 304
Target Start/End: Complemental strand, 9268334 - 9268068
Alignment:
| Q |
38 |
aaaggttttgctttggggtgttgttgactgtgttcacgagatcgcagacgagttgttgatgtatttgggtttgagtatgaattgggacactgccaagggg |
137 |
Q |
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| T |
9268334 |
aaaggttatgcttcggggtgtttttgactgtgttcacgagatcgcatataagttgttgaggtttttggatttgagtatgaactgtcccacgggtgagggg |
9268235 |
T |
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| Q |
138 |
atttcgtacaaagttgttttggattttgttaaattttgtggccctttgaggatgggatttgccgaggagcaagcaacatccgatgaatctttgaattatg |
237 |
Q |
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| T |
9268234 |
ctttcgttcaaggttgttttggattttgttaaattctccgaccatttgaggatgggattggccatgcatcaagcaacatccgatgaatttttgaattgtg |
9268135 |
T |
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| Q |
238 |
atatttgctatgaggaggatcccttgcttttaggagtacctgatcaacttcatattgtatttattaa |
304 |
Q |
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| T |
9268134 |
ctatttgttacacagagggtcccttgtttgcaggagtagttgatcaacttcatattgtatttattaa |
9268068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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