View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9303_low_74 (Length: 300)

Name: NF9303_low_74
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9303_low_74
NF9303_low_74
[»] chr6 (3 HSPs)
chr6 (111-299)||(35091745-35091933)
chr6 (18-91)||(35090064-35090137)
chr6 (90-218)||(19228492-19228620)
[»] chr7 (5 HSPs)
chr7 (79-218)||(30464263-30464402)
chr7 (84-216)||(8160678-8160810)
chr7 (236-292)||(30464521-30464577)
chr7 (250-292)||(8160939-8160981)
chr7 (112-218)||(39827396-39827502)
[»] chr3 (4 HSPs)
chr3 (236-292)||(1581049-1581105)
chr3 (236-297)||(41404207-41404268)
chr3 (236-281)||(3663805-3663850)
chr3 (114-218)||(41403985-41404089)
[»] chr1 (3 HSPs)
chr1 (244-292)||(32984438-32984486)
chr1 (236-299)||(3290520-3290583)
chr1 (75-218)||(32984613-32984756)
[»] chr2 (4 HSPs)
chr2 (236-299)||(9259579-9259642)
chr2 (238-299)||(17139937-17139997)
chr2 (119-218)||(39809469-39809568)
chr2 (244-290)||(31392331-31392377)
[»] chr5 (1 HSPs)
chr5 (79-174)||(12892984-12893079)
[»] chr8 (1 HSPs)
chr8 (236-282)||(12735469-12735515)


Alignment Details
Target: chr6 (Bit Score: 136; Significance: 6e-71; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 111 - 299
Target Start/End: Original strand, 35091745 - 35091933
Alignment:
Q  111 gagaaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaaagatttaagtctaattggacactactcataca 210  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  35091745 gagaaaagagaaaactaaacatagatgattttaggagttgttatctcgataacatcagctaacaccaaagaattaagcctaattggacactactcataca 35091844  T
Q  211 catgcaactcagtgannnnnnngattgagacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccaccaaactcga 299  Q
    || ||||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  35091845 cacgcaactcagtgatttttttgattgagacgtcaaccaacaacacttccatccttagttgtgtgcagggtacacaccaccacactcga 35091933  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 35090064 - 35090137
Alignment:
Q  18 ttatttacgtttgatatatatcttcatacttttggtattgttaatcagtgctttaagatatttttattttggga 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35090064 ttatttacgtttgatatatatcttcatacttttggtattgttaatcagtgctttaagatatttttattttggga 35090137  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 218
Target Start/End: Complemental strand, 19228620 - 19228492
Alignment:
Q  90 gaaacaaagagacctaagtatgagaaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaaagatttaagtc 189  Q
    ||||||||||| ||||||   |||||||||||||| |||||| |||||| | |||||||  ||||  | |||||||||| |||||||| |||  |||| |    
T  19228620 gaaacaaagaggcctaagctcgagaaaagagaaaattaaacagagatgaatctaggggtcattattcccataacatcagctaacaccagagaactaagcc 19228521  T
Q  190 taattggacactactcatacacatgcaac 218  Q
    || ||||||| | |||||||||| |||||    
T  19228520 tagttggacattgctcatacacacgcaac 19228492  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 30464263 - 30464402
Alignment:
Q  79 ttttattttgggaaacaaagagacctaagtatgagaaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaa 178  Q
    |||| ||||| ||||||||| | ||||||   ||||||||||||||  ||||| |||||| ||||||||| | |||| | |||||||||| ||||||||     
T  30464263 tttttttttgagaaacaaaggggcctaagctcgagaaaagagaaaatcaaacaaagatgactttaggggtcgctatccccataacatcagctaacaccag 30464362  T
Q  179 agatttaagtctaattggacactactcatacacatgcaac 218  Q
    |||  |||| |||  ||||||||||||||||||| |||||    
T  30464363 agaaataagcctagctggacactactcatacacacgcaac 30464402  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 216
Target Start/End: Original strand, 8160678 - 8160810
Alignment:
Q  84 ttttgggaaacaaagagacctaagtatgagaaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaaagatt 183  Q
    ||||||||||||||| | |||||| | ||||||||||||||||||| | |||||| | |||||||   |||| | |||||||||| |||||||| |||      
T  8160678 ttttgggaaacaaaggggcctaagcacgagaaaagagaaaactaaatagagatgactctaggggtcactatccccataacatcagctaacaccagagaac 8160777  T
Q  184 taagtctaattggacactactcatacacatgca 216  Q
    ||||  ||  |||||||| |||| |||||||||    
T  8160778 taagcttagctggacactgctcagacacatgca 8160810  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 30464521 - 30464577
Alignment:
Q  236 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccacca 292  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||  ||||||||    
T  30464521 tgagacgccaaccaacaacacttccattcttagttgtctgcagggtatgcaccacca 30464577  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 8160939 - 8160981
Alignment:
Q  250 acaacacttccatccttagttgtctgcagggtacacaccacca 292  Q
    |||||||||| ||||||||||||||||||||||  ||||||||    
T  8160939 acaacacttctatccttagttgtctgcagggtatgcaccacca 8160981  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 39827396 - 39827502
Alignment:
Q  112 agaaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaaagatttaagtctaattggacactactcatacac 211  Q
    |||||| ||||||||||||| |||||| | ||||||| | |||| | |||||||||  ||||| || | |  |||||||| || |||||| |||||||||    
T  39827396 agaaaaaagaaaactaaacagagatgactctaggggtcgctatccctataacatcaactaacatcagataactaagtctagtttgacactgctcatacac 39827495  T
Q  212 atgcaac 218  Q
    | |||||    
T  39827496 acgcaac 39827502  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 1581105 - 1581049
Alignment:
Q  236 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccacca 292  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||  ||||||||    
T  1581105 tgagacgccaaccaacaacacttccatccttagttgtctgtagggtatgcaccacca 1581049  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 41404207 - 41404268
Alignment:
Q  236 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccaccaaactc 297  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||  |||||||| ||||    
T  41404207 tgagacgccaaccaacaacacttccatcctaagttgtttgcagggtatgcaccaccacactc 41404268  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 3663805 - 3663850
Alignment:
Q  236 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggt 281  Q
    ||||||| |||||||||||||||||||| |||||||| ||||||||    
T  3663805 tgagacgccaaccaacaacacttccatctttagttgtttgcagggt 3663850  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 218
Target Start/End: Original strand, 41403985 - 41404089
Alignment:
Q  114 aaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaaagatttaagtctaattggacactactcatacacat 213  Q
    |||||||||||||| ||| ||| || | |||| || | ||||   ||||||| || |||||||| |||  ||||||||  ||||||||| ||||||||||    
T  41403985 aaaagagaaaactagacagagacgactctaggagtcgctatccacataacataagctaacaccagagaactaagtctagctggacactagtcatacacat 41404084  T
Q  214 gcaac 218  Q
    |||||    
T  41404085 gcaac 41404089  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 32984486 - 32984438
Alignment:
Q  244 caaccaacaacacttccatccttagttgtctgcagggtacacaccacca 292  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||    
T  32984486 caaccaacaacacttccatccttagttgtctgcagggtatgcaccacca 32984438  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 3290583 - 3290520
Alignment:
Q  236 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccaccaaactcga 299  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||||| ||| |||| ||||||    
T  3290583 tgagacgccaaccaacaacacttccatccttgattgtctgcagggtacgcacaaccacactcga 3290520  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 218
Target Start/End: Complemental strand, 32984756 - 32984613
Alignment:
Q  75 atatttttattttgggaaacaaagagacctaagtatgagaaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaaca 174  Q
    ||||||||  |||||||||||||| | | ||||   || ||||||||||| |||||| |||||| | ||||||||| |||| | |||||||||  |||||    
T  32984756 atattttttgtttgggaaacaaaggggcttaagcccgaaaaaagagaaaattaaacagagatgactctaggggttgctatccccataacatcaactaaca 32984657  T
Q  175 ccaaagatttaagtctaattggacactactcatacacatgcaac 218  Q
    ||| |||  |||| |||  |||||| | |||||||||| |||||    
T  32984656 ccagagaactaagcctagctggacattgctcatacacacgcaac 32984613  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 299
Target Start/End: Original strand, 9259579 - 9259642
Alignment:
Q  236 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccaccaaactcga 299  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| || | |||||||| ||||||    
T  9259579 tgagacgccaaccaacaacacttccatccttagttgtctacagagtcctcaccaccacactcga 9259642  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 17139937 - 17139997
Alignment:
Q  238 agacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccaccaaactcga 299  Q
    ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||| ||||||    
T  17139937 agacgccaaccaa-aacacttccatccttagttgtctgcagagtccacaccaccacactcga 17139997  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 39809568 - 39809469
Alignment:
Q  119 agaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaaagatttaagtctaattggacactactcatacacatgcaac 218  Q
    ||||||||||||| |||||| | ||||||| | |||| | ||||||| ||||||||||  | |  |||| |||| | ||||||||||||||||| |||||    
T  39809568 agaaaactaaacagagatgactctaggggtcgctatccccataacattagttaacaccggataactaagcctaactagacactactcatacacacgcaac 39809469  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 31392377 - 31392331
Alignment:
Q  244 caaccaacaacacttccatccttagttgtctgcagggtacacaccac 290  Q
    |||||||||| |||||||||||||||| |||||||||| | ||||||    
T  31392377 caaccaacaatacttccatccttagttatctgcagggtccgcaccac 31392331  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 12892984 - 12893079
Alignment:
Q  79 ttttattttgggaaacaaagagacctaagtatgagaaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaaca 174  Q
    |||| |||| |||||||||| ||||||||  ||||||| |||||||||||| | ||| || ||||| ||| |||||| | |||||||||| |||||    
T  12892984 ttttttttttggaaacaaagggacctaagcttgagaaaggagaaaactaaatagagacgactttagaggtcgttatccccataacatcagctaaca 12893079  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 12735469 - 12735515
Alignment:
Q  236 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggta 282  Q
    ||||||||||||||||||||||| |||| |||||||| || ||||||    
T  12735469 tgagacgtcaaccaacaacactttcatctttagttgtttgtagggta 12735515  T

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