View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9303_low_76 (Length: 299)
Name: NF9303_low_76
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_76 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 7 - 286
Target Start/End: Complemental strand, 9605778 - 9605499
Alignment:
| Q |
7 |
aaggggaatacaagaacacttgctatggtgttgaggagtgagagggagcttctgagcgtgaataaggagcaagaggaggagattttgaggcttaagctca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9605778 |
aaggggaatacaagaacacttgctatggtgttgaggagtgagagggagcttctgagcgtgaataaggagcaagaggaggagattttgaggcttaagctca |
9605679 |
T |
|
| Q |
107 |
tgattgagaataagaataaagaggtatatattttgtgttcttgttgttttgaatctgatttgcaattatgggtctttatatttttcacttaattaatgtt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9605678 |
tgattgagaataagaataaagaggtatatattttgtgttcttgttgttttgaatctgatttgcaattatgggtctttatatttttcacttaattaatgtt |
9605579 |
T |
|
| Q |
207 |
aagttaattaattattgattattgatttttcaatgtttatgatctgatggattataattgttttacctcagaaatgatgt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9605578 |
aagttaattaattattgattattgatttttcaatgtttatgatctgatggattataattgttttacctcagaaatgatgt |
9605499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 66 - 174
Target Start/End: Complemental strand, 48214119 - 48214011
Alignment:
| Q |
66 |
gaataaggagcaagaggaggagattttgaggcttaagctcatgattgagaataagaataaagaggtatatattttgtgttcttgttgttttgaatctgat |
165 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48214119 |
gaataaggagcaagaggagaagattttgaggcttaagctcatgaccgagaataagaataaagaggtatatattttgtgttcatgttgttttgaatctgat |
48214020 |
T |
|
| Q |
166 |
ttgcaatta |
174 |
Q |
| |
|
||||||||| |
|
|
| T |
48214019 |
ttgcaatta |
48214011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University