View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_77 (Length: 295)
Name: NF9303_low_77
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 6932587 - 6932842
Alignment:
| Q |
12 |
ataggctaataaacaggaaacataaaggttaataaaccctcttaaaaatggttagcaaagaaatattgacaactactcaaataatagtaatttatgccta |
111 |
Q |
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| T |
6932587 |
ataggctaataaacaggaaacctaaaggttaataaaccttcttaaaaatggttagcaaagaaatattaacaactactcaaattatagtaatttatgccta |
6932686 |
T |
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| Q |
112 |
aacatagcaatgtaattcctctcgaatgaagtgaaataaattgactatgaattggagaactttatgccgtctccttgttttctagtccacatatctcgat |
211 |
Q |
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| T |
6932687 |
aacatagcaatgtaattcctctcgaatgaagtgaaataaattgactatgaattggagaactttatgccgtctccttgttttctagtccac--atctcgat |
6932784 |
T |
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| Q |
212 |
catctggtataagtataacaatgtgattaggaaaccacacactccctcctgatgccac |
269 |
Q |
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| T |
6932785 |
catctggtaaaagtataaaaatgtgattaggaaatcacacgctccctcctgatgccac |
6932842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 93 - 279
Target Start/End: Complemental strand, 6485994 - 6485810
Alignment:
| Q |
93 |
taatagtaatttatgcctaaacatagcaatgtaattcctctcgaatgaagtgaaataaattgactatgaattggagaactttatgccgtctccttgtttt |
192 |
Q |
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| T |
6485994 |
taatagtaatttatgcctaaacatagcaatgtaattcctctcgaatgaagtgaaataaattgactatgaattggagaactttatgccgtctccttgtttt |
6485895 |
T |
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| Q |
193 |
ctagtccacatatctcgatcatctggtataagtataacaatgtgattaggaaaccacacactccctcctgatgccacagggagatat |
279 |
Q |
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| T |
6485894 |
ctagtccac--atctcgatcatctggtataagtataacaatgtgattaggaaaccacacgctccctcctgatgccactgagagatat |
6485810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 6486023 - 6485990
Alignment:
| Q |
12 |
ataggctaataaacaggaaacataaaggttaata |
45 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
6486023 |
ataggctaataaacaggaaacataaaggttaata |
6485990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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