View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9303_low_81 (Length: 273)

Name: NF9303_low_81
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9303_low_81
NF9303_low_81
[»] chr8 (9 HSPs)
chr8 (20-263)||(15813124-15813367)
chr8 (63-259)||(15799785-15799981)
chr8 (72-259)||(15697287-15697474)
chr8 (72-259)||(15805326-15805513)
chr8 (72-259)||(15764345-15764532)
chr8 (23-249)||(15703618-15703843)
chr8 (72-253)||(15711955-15712136)
chr8 (118-259)||(15722543-15722684)
chr8 (120-240)||(15692659-15692779)
[»] chr3 (5 HSPs)
chr3 (62-259)||(3080388-3080585)
chr3 (63-235)||(4547947-4548119)
chr3 (62-235)||(3094849-3095022)
chr3 (121-244)||(3102377-3102500)
chr3 (121-205)||(3122544-3122628)
[»] chr2 (2 HSPs)
chr2 (137-202)||(2662487-2662552)
chr2 (138-208)||(2672478-2672548)
[»] chr4 (3 HSPs)
chr4 (138-202)||(36370555-36370619)
chr4 (141-202)||(36399760-36399821)
chr4 (138-202)||(36435825-36435889)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 15813124 - 15813367
Alignment:
Q  20 atcatgtaaatttttctaacatatttgttttaaaagagttttcaataacccgtactaggtgccaataactctttttgtctttgtatgacgttgatctttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15813124 atcatgtaaatttttctaacatatttgttttaaaagagttttcaataacccgtactaggtgccaataactctttttgtctttgtatgacattgatctttt 15813223  T
Q  120 tcaaatgtccttgctaatccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaagtg 219  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15813224 tcaaatgcccttgctaatccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaagtg 15813323  T
Q  220 gagaatcctcatgaaggtatagaagtcctcttgcgattcctttg 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  15813324 gagaatcctcatgaaggtatagaagtcctcttgcgattcctttg 15813367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 63 - 259
Target Start/End: Original strand, 15799785 - 15799981
Alignment:
Q  63 aataacccgtactaggtgccaataactctttttgtctttgtatgacgttgatctttttcaaatgtccttgctaatccaaaatcagatatttttggattca 162  Q
    |||||| | ||||||||||||| |||||||||||| ||||| |||| ||| ||||| |||||||| ||||| ||||||||||| ||||||||||||||||    
T  15799785 aataacacatactaggtgccaaaaactctttttgtttttgtctgacattggtctttatcaaatgttcttgccaatccaaaatctgatatttttggattca 15799884  T
Q  163 tttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaagtggagaatcctcatgaaggtatagaagtcctcttgcgattcc 259  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||| |||||    
T  15799885 tttcatcatccagaagaacattgctggctttcagatctctgtggattactctaagtcgagaatcctcatgaaggtatagcaatcctcttgcaattcc 15799981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 72 - 259
Target Start/End: Original strand, 15697287 - 15697474
Alignment:
Q  72 tactaggtgccaataactctttttgtctttgtatgacgttgatctttttcaaatgtccttgctaatccaaaatcagatatttttggattcatttcatcat 171  Q
    |||||||||||||||||||||||||| ||||| |||| |||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||    
T  15697287 tactaggtgccaataactctttttgtttttgtctgactttgacctttttcaaatttccttgctaatccaaaatctgatattttcggattcatttcatcat 15697386  T
Q  172 ccagaagaacattgctcgctttcagatctctgtggattactctaagtggagaatcctcatgaaggtatagaagtcctcttgcgattcc 259  Q
    |||||||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |  |||||||||| ||||||||||||||||||    
T  15697387 ccagaagaacattgctggctttcagatctctatggataactctaagtcgagaatcttggtgaaggtataaaagtcctcttgcgattcc 15697474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 72 - 259
Target Start/End: Original strand, 15805326 - 15805513
Alignment:
Q  72 tactaggtgccaataactctttttgtctttgtatgacgttgatctttttcaaatgtccttgctaatccaaaatcagatatttttggattcatttcatcat 171  Q
    ||||||||||||| |||||||| ||| |||||  | | |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  15805326 tactaggtgccaaaaactctttctgtttttgtcgggcattgatctttttcaaatctccttgctaatccaaaatctgatatttttggattcatttcatcat 15805425  T
Q  172 ccagaagaacattgctcgctttcagatctctgtggattactctaagtggagaatcctcatgaaggtatagaagtcctcttgcgattcc 259  Q
    | |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||| |||||    
T  15805426 ctagaagaacattgctggctttcagatctctgtggattactctaagtcgagaatcctcatgaaggtatagcagtccttttgcaattcc 15805513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 72 - 259
Target Start/End: Original strand, 15764345 - 15764532
Alignment:
Q  72 tactaggtgccaataactctttttgtctttgtatgacgttgatctttttcaaatgtccttgctaatccaaaatcagatatttttggattcatttcatcat 171  Q
    |||||||| || |||||||| ||||| ||| |  ||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  15764345 tactaggttccgataactctatttgtttttcttggacattgatctttttcaaatgtccttgctaacccaaaatctgatatttttggattcatttcatcat 15764444  T
Q  172 ccagaagaacattgctcgctttcagatctctgtggattactctaagtggagaatcctcatgaaggtatagaagtcctcttgcgattcc 259  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||| |||| |||||    
T  15764445 ccagaagaacattgctagctttcagatccctgtggattactctaagtcgagaatcctcatgaaggtatagcagtccttttgcaattcc 15764532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 23 - 249
Target Start/End: Original strand, 15703618 - 15703843
Alignment:
Q  23 atgtaaatttttctaacatatttgttttaaaa-gagttttcaataacccgtactaggtgccaataactctttttgtctttgtatgacgttgatctttttc 121  Q
    ||||||| ||||||||  |||||||||||||| ||||| |||||||| | | |||||| || |||||||||||||| | ||| |||| |||  |||| ||    
T  15703618 atgtaaaattttctaa--tatttgttttaaaaagagttgtcaataacacttgctaggttcccataactctttttgtttctgtctgactttggcctttctc 15703715  T
Q  122 aaatgtccttgctaatccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaagtgga 221  Q
    |||| | ||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||  ||||| || ||||| ||||| ||||||||| ||    
T  15703716 aaattttcttgccaatccaaaatctgatatttttggattcatttcatcatctagaagaacgttgcaggctttaaggtctctatggataactctaagtcga 15703815  T
Q  222 gaatcctcatgaaggtatagaagtcctc 249  Q
    |||||||  |||||||||| ||||||||    
T  15703816 gaatcctggtgaaggtataaaagtcctc 15703843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 72 - 253
Target Start/End: Original strand, 15711955 - 15712136
Alignment:
Q  72 tactaggtgccaataactctttttgtctttgtatgacgttgatctttttcaaatgtccttgctaatccaaaatcagatatttttggattcatttcatcat 171  Q
    |||||||| || || ||||||||||| | ||| |||| |||  ||||||||||  | ||||| |||||||| || ||||||||||||||||||||||| |    
T  15711955 tactaggttcccatgactctttttgtttctgtctgactttggcctttttcaaaccttcttgccaatccaaagtctgatatttttggattcatttcatcgt 15712054  T
Q  172 ccagaagaacattgctcgctttcagatctctgtggattactctaagtggagaatcctcatgaaggtatagaagtcctcttgc 253  Q
    ||| ||| |||||||| ||||||| |||||| ||||| ||||||||| |||||||||| ||||| ||||  |||||||||||    
T  15712055 ccaaaagtacattgcttgctttcatatctctatggataactctaagtcgagaatcctcgtgaagatataacagtcctcttgc 15712136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 118 - 259
Target Start/End: Original strand, 15722543 - 15722684
Alignment:
Q  118 tttcaaatgtccttgctaatccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaag 217  Q
    |||||||| | ||||| || |||||||| |||||||||||||||||||||   ||||||||||| ||||| |||||||||||||  ||||| ||||||||    
T  15722543 tttcaaattttcttgccaaaccaaaatctgatatttttggattcatttcactgtccagaagaacgttgctggctttcagatctcgatggatgactctaag 15722642  T
Q  218 tggagaatcctcatgaaggtatagaagtcctcttgcgattcc 259  Q
    | |||| |||||||| |||||| | |||||||||||||||||    
T  15722643 tcgagagtcctcatgcaggtattgtagtcctcttgcgattcc 15722684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 15692659 - 15692779
Alignment:
Q  120 tcaaatgtccttgctaatccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaagtg 219  Q
    ||||||| |||||| ||||||||||| |||||||| ||||||||||||| ||| |  ||||||||||| ||||| |||||||| || |||||||| | |     
T  15692659 tcaaatgcccttgccaatccaaaatctgatattttgggattcatttcatgatctaatagaacattgctagctttgagatctctatgaattactcttaatc 15692758  T
Q  220 gagaatcctcatgaaggtata 240  Q
     ||| |||||||| |||||||    
T  15692759 tagagtcctcatggaggtata 15692779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 259
Target Start/End: Complemental strand, 3080585 - 3080388
Alignment:
Q  62 caataacccgtactaggtgccaataactctttttgtctttgtatgacgttgatctttttcaaatgtccttgctaatccaaaatcagatatttttggattc 161  Q
    ||||||| | ||||| ||||| | ||||||| |||| |||   |||| ||| ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  3080585 caataacacatactatgtgccgacaactcttcttgtgttttcttgacattggtctttttcaaatgcccttgccaatccaaaatcagatatttttggattc 3080486  T
Q  162 atttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaagtggagaatcctcatgaaggtatagaagtcctcttgcgattcc 259  Q
    || || | ||| |  |||||||| || ||||| || ||||| |||||||||||||||  ||| || |||||||||||||  |||||| |||| |||||    
T  3080485 atctcttgatctaatagaacattacttgcttttaggtctctatggattactctaagtctagagtcttcatgaaggtataagagtccttttgcaattcc 3080388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 63 - 235
Target Start/End: Original strand, 4547947 - 4548119
Alignment:
Q  63 aataacccgtactaggtgccaataactctttttgtctttgtatgacgttgatctttttcaaatgtccttgctaatccaaaatcagatatttttggattca 162  Q
    |||||| | ||||| ||||| |||| |||| |||| |||   |||| |||| |||||||||||| |||||| ||||||||||||||||||||||||||||    
T  4547947 aataacacatactatgtgcccataattcttcttgtgttttcttgactttgacctttttcaaatgcccttgccaatccaaaatcagatatttttggattca 4548046  T
Q  163 tttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaagtggagaatcctcatgaag 235  Q
    | || | ||| | ||||||||| || ||||| || ||||| |||||||||||||||  ||| || ||||||||    
T  4548047 tctcttgatctaaaagaacattacttgcttttaggtctctatggattactctaagtctagagtcttcatgaag 4548119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 235
Target Start/End: Complemental strand, 3095022 - 3094849
Alignment:
Q  62 caataacccgtactaggtgccaataactctttttgtctttgtatgacgttgatctttttcaaatgtccttgctaatccaaaatcagatatttttggattc 161  Q
    ||||||| | ||||| ||||| | ||||||| |||| |||   |||| ||| ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  3095022 caataacacatactatgtgccgacaactcttcttgtgttttcttgacattggtctttttcaaatgcccttgccaatccaaaatcagatatttttggattc 3094923  T
Q  162 atttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaagtggagaatcctcatgaag 235  Q
    || || | ||| |  |||||||| || ||||| || ||||| ||||||||||| |||  ||| || ||||||||    
T  3094922 atctcttgatctaagagaacattacttgcttttaggtctctatggattactcttagtctagagtcttcatgaag 3094849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 244
Target Start/End: Complemental strand, 3102500 - 3102377
Alignment:
Q  121 caaatgtccttgctaatccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaagtgg 220  Q
    ||||||| ||||| | ||||||||| || ||||||||||||||||| | ||| |  |||| |||||| |||||||| |||||||| || ||||| ||       
T  3102500 caaatgttcttgcaagtccaaaatctgagatttttggattcatttcttgatctaatagaatattgctagctttcaggtctctgtgaataactctgagcct 3102401  T
Q  221 agaatcctcatgaaggtatagaag 244  Q
    ||| ||||||||||| ||||||||    
T  3102400 agagtcctcatgaagatatagaag 3102377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 205
Target Start/End: Complemental strand, 3122628 - 3122544
Alignment:
Q  121 caaatgtccttgctaatccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtg 205  Q
    ||||||| ||||||| |||||| || || ||||||||||||||||||| ||| |  | || |||||| |||||||| ||||||||    
T  3122628 caaatgttcttgctagtccaaagtctgaaatttttggattcatttcatgatctaacaaaatattgctggctttcaggtctctgtg 3122544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 2662487 - 2662552
Alignment:
Q  137 tccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctct 202  Q
    |||||| ||||| |||||||||||||||||  |||| | |||||||||||| ||||| ||||||||    
T  2662487 tccaaagtcagaaatttttggattcatttcgccatctaaaagaacattgcttgcttttagatctct 2662552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 2672548 - 2672478
Alignment:
Q  138 ccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggat 208  Q
    |||||||| ||||| |||||||||||||| | ||| || ||||||||||| || || ||||| ||||||||    
T  2672548 ccaaaatctgatatctttggattcatttctttatcaagtagaacattgcttgccttgagatccctgtggat 2672478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 36370619 - 36370555
Alignment:
Q  138 ccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctct 202  Q
    |||||||| || ||||| |||||||||||| |||| || ||||||||||| ||||| ||||||||    
T  36370619 ccaaaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctct 36370555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 36399821 - 36399760
Alignment:
Q  141 aaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctct 202  Q
    ||||| || ||||| |||||||||||| |||| || ||||||||||| ||||| ||||||||    
T  36399821 aaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctct 36399760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 36435889 - 36435825
Alignment:
Q  138 ccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctct 202  Q
    |||||||| || ||||| ||||||||| || |||| || ||||||||||| ||||| ||||||||    
T  36435889 ccaaaatctgagattttgggattcattgcagcatcaaggagaacattgctggcttttagatctct 36435825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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