View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9303_low_82 (Length: 267)
Name: NF9303_low_82
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_82 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 267
Target Start/End: Complemental strand, 23206119 - 23205866
Alignment:
| Q |
14 |
gacatcaatatgcattctccaagctgaactgacggcaatcctggaaggttttcgcatggcagtaaacatgggaatagaggagttagtctgctactcggat |
113 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23206119 |
gacatcaatatgcattctccaagctgaactgacagcaatcctggaaggttttcgcatggcagtaaacatgggaatagaggagttagtctgctactcggat |
23206020 |
T |
|
| Q |
114 |
tctcagctttcaataaatcttgtttcaggaaacgtttctaaattccatgtctatgcggtgataatccaagatatcaaggatatcatagcttcccatcatt |
213 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
23206019 |
tctcagctttcaataaatcttgtttcaggagacgtttctaaattccatgtctatgcggtgataatccaagatatcaaggatatcatagcttcccaccact |
23205920 |
T |
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| Q |
214 |
ttgaaatctttcacactcttagagaaggaaatcattgcgcagattttttagcca |
267 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23205919 |
ttgaaatctttcatactcttagagaaggaaatcattgcgcagattttttagcca |
23205866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 23426400 - 23426651
Alignment:
| Q |
16 |
catcaatatgcattctccaagctgaactgacggcaatcctggaaggttttcgcatggcagtaaacatgggaatagaggagttagtctgctactcggattc |
115 |
Q |
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|||||| |||||||||||||||||||||||| ||||| || ||||||||||||||||| || ||||||||||| |||||||||||||||| ||| ||||| |
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| T |
23426400 |
catcaacatgcattctccaagctgaactgaccgcaattcttgaaggttttcgcatggcggtgaacatgggaattgaggagttagtctgcttctcagattc |
23426499 |
T |
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| Q |
116 |
tcagctttcaataaatcttgtttcaggaaacgtttctaaattccatgtctatgcggtgataatccaagatatcaaggatatcatagcttcccatcatttt |
215 |
Q |
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| T |
23426500 |
tcaactctcagttaatcttgtttcaggagaagtatctagattccatgcctacgcggtgataatccaagatatcaaggatatcatagcttcacaccacttt |
23426599 |
T |
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| Q |
216 |
gaaatctttcacactcttagagaaggaaatcattgcgcagattttttagcca |
267 |
Q |
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|||||| ||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
23426600 |
aaaatctctcacactcttagagaaggaaaccaatgcgcagattttttagcca |
23426651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 24 - 267
Target Start/End: Complemental strand, 11587603 - 11587360
Alignment:
| Q |
24 |
tgcattctccaagctgaactgacggcaatcctggaaggttttcgcatggcagtaaacatgggaatagaggagttagtctgctactcggattctcagcttt |
123 |
Q |
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|||||||| |||||||| || || |||||||| ||||| ||||| ||||| | ||||||||||| |||||||||||||||| ||| || |||||||||| |
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| T |
11587603 |
tgcattcttcaagctgagctcaccgcaatccttgaaggacttcgcctggcattgaacatgggaattgaggagttagtctgcttctcagactctcagcttt |
11587504 |
T |
|
| Q |
124 |
caataaatcttgtttcaggaaacgtttctaaattccatgtctatgcggtgataatccaagatatcaaggatatcatagcttcccatcattttgaaatctt |
223 |
Q |
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|| ||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| | || ||||| |
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| T |
11587503 |
cagtaaatctcttttcaggagacgtttctaaataccatgtctatgcggtgataatccaagatatcaaggatataatagcttcccataacttccgtatctt |
11587404 |
T |
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| Q |
224 |
tcacactcttagagaaggaaatcattgcgcagattttttagcca |
267 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11587403 |
tcacactcttagagaaggaaaccattgcgcagattttttagcca |
11587360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 129 - 267
Target Start/End: Complemental strand, 14031742 - 14031604
Alignment:
| Q |
129 |
aatcttgtttcaggaaacgtttctaaattccatgtctatgcggtgataatccaagatatcaaggatatcatagcttcccatcattttgaaatctttcaca |
228 |
Q |
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||||||||||||||| | ||||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||| || || |||||||||||||||| |
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| T |
14031742 |
aatcttgtttcaggagaagtttctagattccatgcctacgcggtgataatccaagttatcaaggatatcatagcttcacaccactttgaaatctttcaca |
14031643 |
T |
|
| Q |
229 |
ctcttagagaaggaaatcattgcgcagattttttagcca |
267 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |
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| T |
14031642 |
ctcttagagaaggaaatcactgcgcagattttttagcca |
14031604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 24892090 - 24891839
Alignment:
| Q |
16 |
catcaatatgcattctccaagctgaactgacggcaatcctggaaggttttcgcatggcagtaaacatgggaatagaggagttagtctgctactcggattc |
115 |
Q |
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|||||| ||| |||||||||||||||||||| ||||| || ||||||||||||||||| || ||||||||||| |||||||||||||||| ||| ||||| |
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| T |
24892090 |
catcaacatgtattctccaagctgaactgaccgcaattcttgaaggttttcgcatggcggtgaacatgggaattgaggagttagtctgcttctcagattc |
24891991 |
T |
|
| Q |
116 |
tcagctttcaataaatcttgtttcaggaaacgtttctaaattccatgtctatgcggtgataatccaagatatcaaggatatcatagcttcccatcatttt |
215 |
Q |
| |
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||| || ||| | ||||||||||||||| | || |||| |||||||| ||| |||||||||||||||||||||||||||||||| ||||| | || ||| |
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| T |
24891990 |
tcaactctcagttaatcttgtttcaggagaagtctctagattccatgcctacgcggtgataatccaagatatcaaggatatcattgcttcaaaccacttt |
24891891 |
T |
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| Q |
216 |
gaaatctttcacactcttagagaaggaaatcattgcgcagattttttagcca |
267 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
24891890 |
gaaatctttcacactcttagagaaggaaaccactgcgcagattttttagcca |
24891839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 80 - 244
Target Start/End: Complemental strand, 24988861 - 24988697
Alignment:
| Q |
80 |
catgggaatagaggagttagtctgctactcggattctcagctttcaataaatcttgtttcaggaaacgtttctaaattccatgtctatgcggtgataatc |
179 |
Q |
| |
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||||| ||| ||||| ||||| |||| ||| || |||||| ||||| | |||||||||||||| | || ||||||||||||| |||||| |||||||| |
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| T |
24988861 |
catggcaattgaggaattagtgtgcttctcagactctcagatttcagtcaatcttgtttcaggcgaggtatctaaattccatgcctatgcagtgataatt |
24988762 |
T |
|
| Q |
180 |
caagatatcaaggatatcatagcttcccatcattttgaaatctttcacactcttagagaaggaaa |
244 |
Q |
| |
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||||||||||| ||||| ||||||||||| | || |||||||||||||||||||||||||| |
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| T |
24988761 |
caagatatcaatgatataatagcttcccacaacttcaggatctttcacactcttagagaaggaaa |
24988697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 256
Target Start/End: Complemental strand, 46056016 - 46055811
Alignment:
| Q |
51 |
atcctggaaggttttcgcatggcagtaaacatgggaatagaggagttagtctgctactcggattctcagctttcaataaatcttgtttcaggaaacgttt |
150 |
Q |
| |
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||||| ||||||| || |||||||| |||||||| || ||||| ||||| |||| ||| || |||||| ||||| | |||||||| ||||| | || | |
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| T |
46056016 |
atccttgaaggttaccgaatggcagtgaacatgggcattgaggaattagtgtgcttctcagactctcagatttcagtcaatcttgtctcaggcgaggtat |
46055917 |
T |
|
| Q |
151 |
ctaaattccatgtctatgcggtgataatccaagatatcaaggatatcatagcttcccatcattttgaaatctttcacactcttagagaaggaaatcattg |
250 |
Q |
| |
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|||||||||||| |||||| |||||||| ||||||||||||||||| |||| ||||| | || ||||||||||||||||||||||||||| || || |
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| T |
46055916 |
ctaaattccatgcctatgcagtgataattcaagatatcaaggatattttagcctcccacaacttcagaatctttcacactcttagagaaggaaaccactg |
46055817 |
T |
|
| Q |
251 |
cgcaga |
256 |
Q |
| |
|
|||||| |
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|
| T |
46055816 |
cgcaga |
46055811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 253
Target Start/End: Original strand, 14193236 - 14193413
Alignment:
| Q |
76 |
taaacatgggaatagaggagttagtctgctactcggattctcagctttcaataaatcttgtttcaggaaacgtttctaaattccatgtctatgcggtgat |
175 |
Q |
| |
|
||||||||||||| ||| | ||||||| | ||| || ||||| || ||| | |||||| ||||||| | || ||||||||||||| | |||||||| | |
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| T |
14193236 |
taaacatgggaattgagaacctagtctgtttctcagactctcaactgtcagttaatcttatttcaggggaggtctctaaattccatgcccatgcggtgtt |
14193335 |
T |
|
| Q |
176 |
aatccaagatatcaaggatatcatagcttcccatcattttgaaatctttcacactcttagagaaggaaatcattgcgc |
253 |
Q |
| |
|
||| ||||||||||||||| | |||| | | ||| | | | ||| |||||||||| |||||||||||||| ||||| |
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|
| T |
14193336 |
aattcaagatatcaaggatttaatagttgctcataactacaacatccttcacactctaagagaaggaaatcactgcgc |
14193413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 40730840 - 40730876
Alignment:
| Q |
223 |
ttcacactcttagagaaggaaatcattgcgcagattt |
259 |
Q |
| |
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||||||||||||||||||||||||| ||||| ||||| |
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| T |
40730840 |
ttcacactcttagagaaggaaatcaatgcgccgattt |
40730876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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