View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9303_low_84 (Length: 264)

Name: NF9303_low_84
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9303_low_84
NF9303_low_84
[»] chr8 (5 HSPs)
chr8 (86-254)||(556683-556851)
chr8 (1-89)||(556540-556628)
chr8 (124-254)||(22573077-22573207)
chr8 (124-254)||(31734258-31734388)
chr8 (201-254)||(11066502-11066555)
[»] chr1 (11 HSPs)
chr1 (127-254)||(26793702-26793829)
chr1 (124-254)||(19806799-19806931)
chr1 (127-254)||(4076389-4076516)
chr1 (141-254)||(50004939-50005052)
chr1 (127-254)||(4950136-4950263)
chr1 (140-254)||(9383270-9383384)
chr1 (201-254)||(6768281-6768334)
chr1 (171-247)||(28883929-28884005)
chr1 (125-249)||(30209689-30209813)
chr1 (207-254)||(614929-614976)
chr1 (124-161)||(12855371-12855408)
[»] chr4 (6 HSPs)
chr4 (161-254)||(44125983-44126076)
chr4 (125-253)||(19181457-19181585)
chr4 (125-244)||(45413823-45413942)
chr4 (189-254)||(2183302-2183367)
chr4 (189-254)||(36625579-36625644)
chr4 (181-246)||(55945703-55945768)
[»] chr2 (6 HSPs)
chr2 (133-253)||(40626420-40626540)
chr2 (127-254)||(6457543-6457670)
chr2 (190-245)||(7670385-7670440)
chr2 (189-244)||(40054516-40054571)
chr2 (184-245)||(5256379-5256440)
chr2 (210-254)||(6452491-6452535)
[»] chr5 (3 HSPs)
chr5 (126-253)||(32529420-32529549)
chr5 (128-244)||(34731215-34731331)
chr5 (203-254)||(13109730-13109781)
[»] chr6 (2 HSPs)
chr6 (133-254)||(8573831-8573952)
chr6 (133-254)||(8547478-8547599)
[»] chr3 (3 HSPs)
chr3 (134-243)||(40416900-40417009)
chr3 (212-254)||(38457767-38457809)
chr3 (189-254)||(51976195-51976260)
[»] chr7 (7 HSPs)
chr7 (125-254)||(2334029-2334161)
chr7 (124-254)||(41482463-41482593)
chr7 (126-253)||(5784255-5784382)
chr7 (171-254)||(24429679-24429762)
chr7 (189-235)||(41147920-41147966)
chr7 (137-254)||(23318981-23319098)
chr7 (146-254)||(39594599-39594707)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 86 - 254
Target Start/End: Original strand, 556683 - 556851
Alignment:
Q  86 tagaaataaaacaatgagcaatcagtcataacattggtcccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatc 185  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  556683 tagaaataaaacaatgagaaatcagtcataacattgggcccgtttgatgcacatgataaggagataggatatgataaaccaatcatatcctgatccaaac 556782  T
Q  186 cgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 254  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  556783 cgctgtttcgtgcaacaatagaaaatgataaattaaacctatttctaatcatatcctattcaccctttg 556851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 556540 - 556628
Alignment:
Q  1 aagaatatcaacgacaagaattgaggctttattagggaagaacctgcaaataggaagttcataatcaattacatattacaatatataga 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  556540 aagaatatcaacgacaagaattgaggctttattagggaagaacctgcaaataggaagttcataatcaattacatattacaatatataga 556628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 254
Target Start/End: Original strand, 22573077 - 22573207
Alignment:
Q  124 cccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaac 223  Q
    |||||||| ||| ||||||||||||| | |||||||| |    ||| ||||||||  ||||||| ||||| ||||| ||| || ||||||||| || |||    
T  22573077 cccgtttggtgcgcatgataaggagacatgatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaac 22573176  T
Q  224 ttatttctaatcctatcctattcaccctttg 254  Q
     | ||||||||||||||||||| | ||||||    
T  22573177 ctgtttctaatcctatcctattgaacctttg 22573207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 254
Target Start/End: Original strand, 31734258 - 31734388
Alignment:
Q  124 cccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaac 223  Q
    |||||||| |||||||||||  |||| | |||||||||   |  || ||||||| |  |||||| ||||| ||||| |||||  ||||||||||||||||    
T  31734258 cccgtttggtgcacatgatagagagacatgatatgataggactttcctatcctgctttaatccgttgtttggtgcaccaataagaaatgataaattaaac 31734357  T
Q  224 ttatttctaatcctatcctattcaccctttg 254  Q
     |||||| |||| ||||| || |||||||||    
T  31734358 ctatttccaatcttatcccatccaccctttg 31734388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 11066502 - 11066555
Alignment:
Q  201 caatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 254  Q
    |||||| ||| ||||| |||||| ||||||||||||||||||| ||| ||||||    
T  11066502 caataggaaaggataacttaaacctatttctaatcctatcctactcagcctttg 11066555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 127 - 254
Target Start/End: Original strand, 26793702 - 26793829
Alignment:
Q  127 gtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactta 226  Q
    ||||| ||||||||||||| ||| | ||||||||| | | ||| ||||||||| ||||||| ||||| ||||| |||||||||| ||||| |||||||||    
T  26793702 gtttggtgcacatgataagaagacatgatatgatagaactatcatatcctgattcaatccgttgtttggtgcaccaatagaaaaggataacttaaactta 26793801  T
Q  227 tttctaatcctatcctattcaccctttg 254  Q
    ||||||||||||||||| ||| ||||||    
T  26793802 tttctaatcctatcctaatcaacctttg 26793829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 124 - 254
Target Start/End: Complemental strand, 19806931 - 19806799
Alignment:
Q  124 cccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgt--gcaacaatagaaaatgataaattaa 221  Q
    |||||||| ||||||||||||||||||||||||||||||  | ||| |||||| || ||||| | ||||| ||  ||| |||||| ||| ||||||||||    
T  19806931 cccgtttggtgcacatgataaggagataggatatgataacactatcctatccttattcaatctggtgtttggtttgcatcaataggaaaggataaattaa 19806832  T
Q  222 acttatttctaatcctatcctattcaccctttg 254  Q
    || |||||||||||||||||||||||| |||||    
T  19806831 acctatttctaatcctatcctattcactctttg 19806799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 254
Target Start/End: Complemental strand, 4076516 - 4076389
Alignment:
Q  127 gtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactta 226  Q
    ||||| ||||||||||||||||||||||||||||||  | ||| || ||| ||  |||| | ||||| ||||| |||||| ||| |||||||||||| ||    
T  4076516 gtttggtgcacatgataaggagataggatatgataacactatcatacccttatttaatctggtgtttggtgcatcaataggaaaggataaattaaaccta 4076417  T
Q  227 tttctaatcctatcctattcaccctttg 254  Q
    || ||||||||||||||||||| |||||    
T  4076416 ttactaatcctatcctattcactctttg 4076389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 50005052 - 50004939
Alignment:
Q  141 ataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatc 240  Q
    ||||| ||||||||||||||||| | ||| |||| | ||| |||  | ||||| ||||| ||||| |||| ||||| |||||| ||||||||||||||||    
T  50005052 ataagaagataggatatgataaaactatcatatcttaatctaatttgatgtttggtgcaccaataaaaaaggataatttaaacctatttctaatcctatc 50004953  T
Q  241 ctattcaccctttg 254  Q
    ||| ||||||||||    
T  50004952 ctaatcaccctttg 50004939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 254
Target Start/End: Original strand, 4950136 - 4950263
Alignment:
Q  127 gtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactta 226  Q
    ||||| ||||||||||||| | ||| ||||||||||||  ||| |||| || | ||||  | ||||| ||||| |||||||||||||||| ||||||| |    
T  4950136 gtttggtgcacatgataagaaaataagatatgataaacatatcctatcttgtttcaatttgatgtttggtgcatcaatagaaaatgataatttaaactca 4950235  T
Q  227 tttctaatcctatcctattcaccctttg 254  Q
    |||  |||| ||||||||| ||||||||    
T  4950236 ttttcaatcatatcctatttaccctttg 4950263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 254
Target Start/End: Complemental strand, 9383384 - 9383270
Alignment:
Q  140 gataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctat 239  Q
    |||| ||||| | ||||||||||| | |||  ||||||||  |||||  ||||| ||||| |||||| ||  ||||||||||||  |||||||||| |||    
T  9383384 gatagggagaaaagatatgataaaactatcacatcctgattaaatccattgtttggtgcaccaataggaacggataaattaaaccaatttctaatcttat 9383285  T
Q  240 cctattcaccctttg 254  Q
    |||| ||||||||||    
T  9383284 cctactcaccctttg 9383270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 6768281 - 6768334
Alignment:
Q  201 caatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 254  Q
    ||||||||||||||||||||||||||||||  ||||||| |||| || ||||||    
T  6768281 caatagaaaatgataaattaaacttatttcctatcctattctatccaacctttg 6768334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 28884005 - 28883929
Alignment:
Q  171 tatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattca 247  Q
    |||| |||| |||||| |||||| ||||| |||||| | | |||||||||||||| || ||||||||||| ||||||    
T  28884005 tatcttgattcaatccactgtttggtgcaccaatagtataggataaattaaactttttcctaatcctatcttattca 28883929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 249
Target Start/End: Original strand, 30209689 - 30209813
Alignment:
Q  125 ccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaact 224  Q
    ||||||| ||||||||||||| ||  ||| |||||||||   ||| ||||||  |  |||| | ||||| || || ||||||||||||||||| ||| ||    
T  30209689 ccgtttggtgcacatgataagaagtcagggtatgataaaattatcatatcctacttaaatctgttgtttggtacaccaatagaaaatgataaaataatct 30209788  T
Q  225 tatttctaatcctatcctattcacc 249  Q
     ||| || |||||||||||||||||    
T  30209789 cattacttatcctatcctattcacc 30209813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 614976 - 614929
Alignment:
Q  207 aaaatgataaattaaacttatttctaatcctatcctattcaccctttg 254  Q
    |||||||||||||||||| |||||||||| ||| ||| ||||||||||    
T  614976 aaaatgataaattaaactaatttctaatcttattctactcaccctttg 614929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 12855408 - 12855371
Alignment:
Q  124 cccgtttgatgcacatgataaggagataggatatgata 161  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  12855408 cccgtttggtgcacatgataaggagacaggatatgata 12855371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 44125983 - 44126076
Alignment:
Q  161 aaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 254  Q
    ||||||||| ||||||||||||||  ||| ||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  44125983 aaaccaatcatatcctgatccaatatgctatttggtgcagcaataggaaatgataaattaaacttatttctaatcctatcctattcaccttttg 44126076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 253
Target Start/End: Complemental strand, 19181585 - 19181457
Alignment:
Q  125 ccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaact 224  Q
    ||||||| |||||||||||  |||| | |||||||||||   ||| |||||||||||||||   ||||| ||||| ||| |  | ||||||||||||||     
T  19181585 ccgtttggtgcacatgatagagagacatgatatgataaaattatcctatcctgatccaatctattgtttggtgcaccaacatgatatgataaattaaacc 19181486  T
Q  225 tatttctaatcctatcctattcacccttt 253  Q
    ||||||||||||||||||| ||| |||||    
T  19181485 tatttctaatcctatcctactcatccttt 19181457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 244
Target Start/End: Complemental strand, 45413942 - 45413823
Alignment:
Q  125 ccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaact 224  Q
    ||||||| ||||| ||||| ||||| |||||| |||| | | ||| |||| |||| ||||| | ||||| ||||| |||||| ||| ||||||||||||     
T  45413942 ccgtttggtgcacttgatagggagacaggataggatagaactatcatatcttgattcaatcggttgtttggtgcaccaataggaaaggataaattaaacc 45413843  T
Q  225 tatttctaatcctatcctat 244  Q
    ||||||  ||||||||||||    
T  45413842 tatttcctatcctatcctat 45413823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 2183302 - 2183367
Alignment:
Q  189 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 254  Q
    ||||| ||||| |||||||||| ||||||||||||| ||||| ||||||||||||| || ||||||    
T  2183302 tgtttggtgcaccaatagaaaaggataaattaaactcatttccaatcctatcctatccaacctttg 2183367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 36625644 - 36625579
Alignment:
Q  189 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 254  Q
    ||||| |||||  ||||| | |||||||||||||| |||| | |||||||||||||||||||||||    
T  36625644 tgtttggtgcactaataggatatgataaattaaacctattacgaatcctatcctattcaccctttg 36625579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 55945768 - 55945703
Alignment:
Q  181 caatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattc 246  Q
    ||||||| ||||| ||||| |||||| ||| |||||||  ||  ||||||||||||||||||||||    
T  55945768 caatccgttgtttggtgcaccaataggaaaggataaatccaatctatttctaatcctatcctattc 55945703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 253
Target Start/End: Original strand, 40626420 - 40626540
Alignment:
Q  133 tgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttcta 232  Q
    ||||||||||| | ||| ||||||||||||| | ||| |||| |||| ||||| ||||||| ||||| |||||| ||| ||||| |||||  ||||||||    
T  40626420 tgcacatgataggaagacaggatatgataaaactatcatatcttgattcaatctgctgtttggtgcaccaataggaaaggataatttaaatatatttcta 40626519  T
Q  233 atcctatcctattcacccttt 253  Q
    ||||||||||| |||||||||    
T  40626520 atcctatcctactcacccttt 40626540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 254
Target Start/End: Original strand, 6457543 - 6457670
Alignment:
Q  127 gtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactta 226  Q
    ||||| |||||||||||  |||| ||||||||||| | | ||| |||| |||| ||||| | ||||| ||||| ||||||||||||||||||||||   |    
T  6457543 gtttggtgcacatgatagagagacaggatatgatagaactatcatatcatgattcaatctgttgtttggtgcaccaatagaaaatgataaattaaatcaa 6457642  T
Q  227 tttctaatcctatcctattcaccctttg 254  Q
    |||| |||| |||| ||| |||||||||    
T  6457643 tttccaatcatatcttatccaccctttg 6457670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 7670385 - 7670440
Alignment:
Q  190 gtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctatt 245  Q
    |||| ||||| |||||||||||||||| || ||| | |||||||||||||||||||    
T  7670385 gtttggtgcaccaatagaaaatgataagtttaacctgtttctaatcctatcctatt 7670440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 40054571 - 40054516
Alignment:
Q  189 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctat 244  Q
    ||||| ||||| ||||||||||||||||| ||||| ||||  ||||||||||||||    
T  40054571 tgtttggtgcaccaatagaaaatgataaactaaacctattgttaatcctatcctat 40054516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 5256379 - 5256440
Alignment:
Q  184 tccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctatt 245  Q
    |||||||||| ||||| |  ||| |||||||||||||||||| ||  |||||||||||||||    
T  5256379 tccgctgtttggtgcaccggtaggaaatgataaattaaacttgttgttaatcctatcctatt 5256440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 6452491 - 6452535
Alignment:
Q  210 atgataaattaaacttatttctaatcctatcctattcaccctttg 254  Q
    |||||||||||||| |||| |||||| |||||||||||| |||||    
T  6452491 atgataaattaaacctattactaatcttatcctattcacgctttg 6452535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 253
Target Start/End: Complemental strand, 32529549 - 32529420
Alignment:
Q  126 cgtttgatgcacatgataaggagataggatatgataaaccaatcgtat--cctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaac 223  Q
    |||||||||||||||||||| ||| | ||||||||||| | ||| |||  | |  | ||||||||||||| ||||| ||||| ||||  |||||||||||    
T  32529549 cgtttgatgcacatgataagaagacaagatatgataaaactatcatatatcttacttcaatccgctgtttggtgcaccaataaaaaagaataaattaaac 32529450  T
Q  224 ttatttctaatcctatcctattcacccttt 253  Q
    |||||||||||| |||| |||||| |||||    
T  32529449 ttatttctaatcatatcttattcatccttt 32529420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 34731215 - 34731331
Alignment:
Q  128 tttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttat 227  Q
    |||| ||| |||||||| |||||||||||||||||  | ||| ||||||  |  |||||  ||||| ||||| |||||| ||| |||||| ||||| |||    
T  34731215 tttggtgcgcatgataaagagataggatatgataacactatcatatcctatttaaatcccttgtttggtgcaccaataggaaaggataaactaaacctat 34731314  T
Q  228 ttctaatcctatcctat 244  Q
    |  ||||||||||||||    
T  34731315 tgttaatcctatcctat 34731331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 13109730 - 13109781
Alignment:
Q  203 atagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 254  Q
    |||||||||||||| || ||| ||||||||||| |||||||| |||||||||    
T  13109730 atagaaaatgataagtttaacatatttctaatcatatcctatccaccctttg 13109781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 254
Target Start/End: Complemental strand, 8573952 - 8573831
Alignment:
Q  133 tgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttcta 232  Q
    ||||||||||||| | | || |||||||||| ||||  ||||||| | |||||| | |||| | ||| |||||| ||||||||| |||||| ||||||||    
T  8573952 tgcacatgataagaaaacagaatatgataaaacaattctatcctgtttcaatcctccgtttggagcatcaataggaaatgataacttaaacctatttcta 8573853  T
Q  233 atcctatcctattcaccctttg 254  Q
    ||| |||| |||||||||||||    
T  8573852 atcttatcatattcaccctttg 8573831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 254
Target Start/End: Complemental strand, 8547599 - 8547478
Alignment:
Q  133 tgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttcta 232  Q
    ||||||||||| | | | || |||||||||| ||||  |||| || | |||||||| |||| | ||| |||||| ||| ||||| |||||| ||||||||    
T  8547599 tgcacatgataggaaaacagaatatgataaaacaattctatcatgtttcaatccgccgtttggagcatcaataggaaaggataacttaaacctatttcta 8547500  T
Q  233 atcctatcctattcaccctttg 254  Q
    ||| |||| |||||||||||||    
T  8547499 atcttatcatattcaccctttg 8547478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 243
Target Start/End: Original strand, 40416900 - 40417009
Alignment:
Q  134 gcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaa 233  Q
    |||||||||| | ||| ||||||||| ||| | ||| ||||||| | ||||||| ||||| ||||| ||| ||||||||||||||||||  ||||| |||    
T  40416900 gcacatgataggaagacaggatatgaaaaaactatcatatcctgcttcaatccgttgtttggtgcatcaacagaaaatgataaattaaatatatttttaa 40416999  T
Q  234 tcctatccta 243  Q
    ||||||||||    
T  40417000 tcctatccta 40417009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 38457767 - 38457809
Alignment:
Q  212 gataaattaaacttatttctaatcctatcctattcaccctttg 254  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||    
T  38457767 gataatttaaactcatttctaatcctatcctattcaccttttg 38457809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 51976195 - 51976260
Alignment:
Q  189 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 254  Q
    ||||| ||||| ||||||||||||||||  |||   ||||||||||| ||||||||||||| ||||    
T  51976195 tgtttggtgcaccaatagaaaatgataagctaaggctatttctaatcttatcctattcaccatttg 51976260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 254
Target Start/End: Complemental strand, 2334161 - 2334029
Alignment:
Q  125 ccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctga---tccaatccgctgtttcgtgcaacaatagaaaatgataaattaa 221  Q
    ||||||||||| ||||||||||||| | ||||||||||  | ||| ||||||||   | ||||||| ||||| ||||| |||||| |   ||||| ||||    
T  2334161 ccgtttgatgcgcatgataaggagacatgatatgataacactatcatatcctgaatattcaatccggtgtttggtgcaccaataggattggataacttaa 2334062  T
Q  222 acttatttctaatcctatcctattcaccctttg 254  Q
    || ||||| ||||||||||||||||||| ||||    
T  2334061 acctatttttaatcctatcctattcaccttttg 2334029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 254
Target Start/End: Complemental strand, 41482593 - 41482463
Alignment:
Q  124 cccgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaac 223  Q
    |||||||| ||||||||||| | ||| | |||| |||||| | ||| | |||||||  ||| |||||||| ||||| ||| || ||| ||||| ||||||    
T  41482593 cccgtttggtgcacatgataggaagacatgataggataaaactatcatctcctgatttaatgcgctgtttggtgcaccaacaggaaaggataacttaaac 41482494  T
Q  224 ttatttctaatcctatcctattcaccctttg 254  Q
     ||||| ||||| ||||||| ||||||||||    
T  41482493 ctatttttaatcatatcctactcaccctttg 41482463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 253
Target Start/End: Original strand, 5784255 - 5784382
Alignment:
Q  126 cgtttgatgcacatgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaactt 225  Q
    |||||| | |||||||||| ||||||| ||||||| ||   ||  |||| |||||||||| |   ||| ||||| ||||| |||| ||||| ||||||||    
T  5784255 cgtttggtacacatgataaagagatagcatatgatgaaattattatatcttgatccaatcagtaatttggtgcatcaataaaaaaggataagttaaactt 5784354  T
Q  226 atttctaatcctatcctattcacccttt 253  Q
    |||||||||| |||| |||||| |||||    
T  5784355 atttctaatcgtatcatattcatccttt 5784382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 24429679 - 24429762
Alignment:
Q  171 tatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctattcaccctttg 254  Q
    ||||||||| || || |||| ||  |||| |||||||||||||||| |||||  ||||| |||||||||| || ||||||||||    
T  24429679 tatcctgattcattctgctgcttgatgcaccaatagaaaatgataatttaaaactatttataatcctatcttactcaccctttg 24429762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 41147966 - 41147920
Alignment:
Q  189 tgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatc 235  Q
    ||||| ||||| |||||||||| |||||||||||||||||| |||||    
T  41147966 tgtttggtgcatcaatagaaaaggataaattaaacttatttataatc 41147920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 254
Target Start/End: Complemental strand, 23319098 - 23318981
Alignment:
Q  137 catgataaggagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcc 236  Q
    ||||||||| ||| ||||||||||||  | ||| |||||||||  |||| | ||||| || || ||| |  ||| ||||| |||||| ||||| ||||||    
T  23319098 catgataagaagacaggatatgataacactatcatatcctgattaaatctgttgtttggtccaccaacatgaaaggataatttaaacctatttttaatcc 23318999  T
Q  237 tatcctattcaccctttg 254  Q
    ||||||||| | ||||||    
T  23318998 tatcctattgagcctttg 23318981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 254
Target Start/End: Original strand, 39594599 - 39594707
Alignment:
Q  146 gagataggatatgataaaccaatcgtatcctgatccaatccgctgtttcgtgcaacaatagaaaatgataaattaaacttatttctaatcctatcctatt 245  Q
    |||| ||||||||||||| | ||| ||||||  |  |||||| ||||| ||||| |||||  | ||| |||||||||| |||| |||||| |||| ||||    
T  39594599 gagagaggatatgataaaactatcatatcctacttaaatccgttgtttggtgcaccaataagatatgctaaattaaacctattactaatcttatcatatt 39594698  T
Q  246 caccctttg 254  Q
    || ||||||    
T  39594699 catcctttg 39594707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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