View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_86 (Length: 262)
Name: NF9303_low_86
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_86 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 50200807 - 50200552
Alignment:
| Q |
1 |
tcatttcaaattaatctacatactaagctgaacgtgaaatttccaatttactagctgtttaattggtaattgttgatagtatattagcagtagataatta |
100 |
Q |
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| T |
50200807 |
tcatttcaaattaatctacatactaagctgaacgtgaaatttccaatttactagctgtttaattggtaattgttgatagtatattagcagtagataatta |
50200708 |
T |
|
| Q |
101 |
agat-ataccttctacatgtattataagacttaattcaatgtgtaaacaagcatgaaccttttcaaattatatgtgtgtaagattaagtttgtaaacctt |
199 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50200707 |
agattataccttctacatgtattataagacttaattcaatgtgtaaacaagcatgaaccttttcaaattatatgtgtgtaagattaagtttgtaaacctt |
50200608 |
T |
|
| Q |
200 |
gttaacattctaaaaccatttatatataaatgctaaaaattttaatgaatcctttg |
255 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50200607 |
gttaacattctaaaaccatttatatataaatgctaaattttttaatgaatcctttg |
50200552 |
T |
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