View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9303_low_90 (Length: 259)

Name: NF9303_low_90
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9303_low_90
NF9303_low_90
[»] chr2 (2 HSPs)
chr2 (1-157)||(16915978-16916134)
chr2 (1-39)||(4076303-4076341)
[»] chr1 (8 HSPs)
chr1 (1-157)||(18431242-18431398)
chr1 (57-121)||(1014872-1014936)
chr1 (1-60)||(22788094-22788153)
chr1 (1-60)||(1014409-1014468)
chr1 (119-160)||(22787424-22787465)
chr1 (119-159)||(11943666-11943706)
chr1 (119-162)||(5458618-5458661)
chr1 (123-162)||(6154068-6154107)
[»] scaffold0571 (1 HSPs)
scaffold0571 (1-160)||(2-161)
[»] chr7 (8 HSPs)
chr7 (1-157)||(46437666-46437822)
chr7 (1-60)||(39780581-39780640)
chr7 (57-115)||(39786133-39786191)
chr7 (119-160)||(38663364-38663405)
chr7 (123-162)||(39781160-39781199)
chr7 (123-160)||(43266096-43266133)
chr7 (122-162)||(42896847-42896887)
chr7 (119-160)||(36616865-36616906)
[»] chr6 (9 HSPs)
chr6 (1-162)||(5013726-5013886)
chr6 (57-121)||(18819094-18819158)
chr6 (57-121)||(24903862-24903926)
chr6 (1-60)||(16693321-16693380)
chr6 (1-60)||(18819423-18819482)
chr6 (6-60)||(24904329-24904383)
chr6 (119-160)||(16693607-16693648)
chr6 (119-161)||(18816825-18816867)
chr6 (119-161)||(595770-595812)
[»] chr8 (6 HSPs)
chr8 (57-121)||(45484062-45484126)
chr8 (1-60)||(28535513-28535572)
chr8 (1-60)||(45483738-45483797)
chr8 (1-60)||(11463630-11463689)
chr8 (119-160)||(45486353-45486394)
chr8 (123-160)||(11462730-11462767)
[»] chr3 (16 HSPs)
chr3 (57-121)||(26905332-26905396)
chr3 (57-121)||(36615644-36615708)
chr3 (1-60)||(25069615-25069674)
chr3 (1-60)||(26905661-26905720)
chr3 (1-60)||(36615320-36615379)
chr3 (1-60)||(52118645-52118704)
chr3 (1-60)||(28211380-28211439)
chr3 (1-60)||(26556973-26557032)
chr3 (119-162)||(25070869-25070912)
chr3 (119-161)||(26903063-26903105)
chr3 (119-161)||(36617935-36617977)
chr3 (119-160)||(26557644-26557685)
chr3 (119-160)||(28210880-28210921)
chr3 (119-160)||(52119126-52119167)
chr3 (123-160)||(2125769-2125806)
chr3 (193-242)||(37130547-37130596)
[»] chr5 (10 HSPs)
chr5 (1-60)||(25634141-25634200)
chr5 (2-60)||(17074909-17074967)
chr5 (58-117)||(17075326-17075385)
chr5 (1-60)||(18113464-18113523)
chr5 (123-160)||(9047488-9047525)
chr5 (123-159)||(423987-424023)
chr5 (8-58)||(424471-424521)
chr5 (123-161)||(18108361-18108399)
chr5 (122-159)||(17077002-17077039)
chr5 (121-162)||(13475552-13475593)
[»] chr4 (8 HSPs)
chr4 (1-60)||(45067438-45067497)
chr4 (57-121)||(8904153-8904217)
chr4 (57-121)||(45066030-45066094)
chr4 (1-57)||(8903586-8903642)
chr4 (119-153)||(45065888-45065922)
chr4 (123-156)||(8904430-8904463)
chr4 (122-162)||(2917615-2917655)
chr4 (121-161)||(47286603-47286643)


Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 16916134 - 16915978
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttaggcctccaatttcaagctatcatcctgacatcaaagatgag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16916134 aatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttaggcctccaatttcaagctatcatcctgacatccaagatgag 16916035  T
Q  101 gtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccgccc 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16916034 gtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctaaatccgccc 16915978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 4076341 - 4076303
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctaca 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4076341 aatagtcaattgattctctactttctcattcattctaca 4076303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 18431398 - 18431242
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttaggcctccaatttcaagctatcatcctgacatcaaagatgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18431398 aatagtcaattgattctctactttctcattcattctacaattgtttttttagggttttaggcctccaatttcaagctatcatcctgacatccaagatgag 18431299  T
Q  101 gtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccgccc 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18431298 gtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccgccc 18431242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 1014872 - 1014936
Alignment:
Q  57 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 121  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1014872 ttaggcctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 1014936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 22788153 - 22788094
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22788153 aatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 22788094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 1014409 - 1014468
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 60  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  1014409 aatagtcaattgattctctactttctcattcattctacaattgattttttagggttttag 1014468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 22787465 - 22787424
Alignment:
Q  119 aaattttgccacactaatatgaaatgtctagatccgcccctg 160  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  22787465 aaattttgccacactaatatgacatgtctagatccgcccctg 22787424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 11943706 - 11943666
Alignment:
Q  119 aaattttgccacactaatatgaaatgtctagatccgcccct 159  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  11943706 aaattttgccacactaatatcaaatgtctagatccgcccct 11943666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 5458661 - 5458618
Alignment:
Q  119 aaattttgccacactaatatgaaatgtctagatccgcccctgat 162  Q
    |||||||||||||| ||||| ||||||||| |||||||||||||    
T  5458661 aaattttgccacaccaatatcaaatgtctacatccgcccctgat 5458618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 6154107 - 6154068
Alignment:
Q  123 tttgccacactaatatgaaatgtctagatccgcccctgat 162  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  6154107 tttgccacactaatatgaaatgtctagatccacccatgat 6154068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 2 - 161
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttaggcctccaatttcaagctatcatcctgacatcaaagatgag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| || |||||    
T  2 aatagtcaattgattctctactttctcattcattctacaattgcttttttaggattttaggcctccaatttcaagctatcatcctgacatccaaaatgag 101  T
Q  101 gtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccgcccctg 160  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  102 gtacgcaaagcttacttgaaattttgccacactaatatgaaatgtctagatccacccctg 161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 46437666 - 46437822
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttaggcctccaatttcaagctatcatcctgacatcaaagatgag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||      
T  46437666 aatagtcaattgattctctactttctcattcattctacaattgcttttttaggattttaggcctccaatttcaagctatcatcctgacatccaagatgca 46437765  T
Q  101 gtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccgccc 157  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46437766 gtacgcaaagcttacttgaaattttgccacactaatataaaatgtctagatccgccc 46437822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 39780581 - 39780640
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39780581 aatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 39780640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 39786191 - 39786133
Alignment:
Q  57 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttac 115  Q
    |||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  39786191 ttaggcctccaatttcaaactatcatcctgacattcaagatgaggtacgtaaagcttac 39786133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 38663364 - 38663405
Alignment:
Q  119 aaattttgccacactaatatgaaatgtctagatccgcccctg 160  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  38663364 aaattttgccacactaatatgcaatgtctagatccgcccctg 38663405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 39781160 - 39781199
Alignment:
Q  123 tttgccacactaatatgaaatgtctagatccgcccctgat 162  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  39781160 tttgccacactaatatgcaatgtctagatccgcccctgat 39781199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 43266096 - 43266133
Alignment:
Q  123 tttgccacactaatatgaaatgtctagatccgcccctg 160  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  43266096 tttgccacactaatatgcaatgtctagatccgcccctg 43266133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 42896887 - 42896847
Alignment:
Q  122 ttttgccacactaatatgaaatgtctagatccgcccctgat 162  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  42896887 ttttgccacaccaatatcaaatgtctagatccgcccctgat 42896847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 36616906 - 36616865
Alignment:
Q  119 aaattttgccacactaatatgaaatgtctagatccgcccctg 160  Q
    ||||||| |||||| ||||| |||||||||||||||||||||    
T  36616906 aaattttaccacaccaatatcaaatgtctagatccgcccctg 36616865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 5e-65; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 5013886 - 5013726
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttaggcctccaatttcaagctatcatcctgacatcaaagatgag 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| ||||||||    
T  5013886 aatagtcaattgattctttactttctcattcattctacaattgcttttttagggttttaggccttcaatttcaagctatcatcctg-catccaagatgag 5013788  T
Q  101 gtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccgcccctgat 162  Q
    | | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5013787 gcatgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccgtccctgat 5013726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 18819158 - 18819094
Alignment:
Q  57 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 121  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18819158 ttaggcctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 18819094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 24903926 - 24903862
Alignment:
Q  57 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 121  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24903926 ttaggcctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 24903862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 16693321 - 16693380
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16693321 aatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 16693380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 18819482 - 18819423
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18819482 aatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 18819423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 24904383 - 24904329
Alignment:
Q  6 tcaattgattctctactttctcattcattctacaattgcttttttggggttttag 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24904383 tcaattgattctctactttctcattcattctacaattgcttttttagggttttag 24904329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 16693607 - 16693648
Alignment:
Q  119 aaattttgccacactaatatgaaatgtctagatccgcccctg 160  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16693607 aaattttgccacactaatatgaaatgtctagatccgcccctg 16693648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 18816867 - 18816825
Alignment:
Q  119 aaattttgccacactaatatgaaatgtctagatccgcccctga 161  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  18816867 aaattttgccacactaatatgcaatgtctagatccgcccctga 18816825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 595770 - 595812
Alignment:
Q  119 aaattttgccacactaatatgaaatgtctagatccgcccctga 161  Q
    |||||||||||||||||||| |||||||||||||| |||||||    
T  595770 aaattttgccacactaatatcaaatgtctagatccacccctga 595812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 45484062 - 45484126
Alignment:
Q  57 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 121  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45484062 ttaggcctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 45484126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 28535513 - 28535572
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28535513 aatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 28535572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 45483738 - 45483797
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45483738 aatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 45483797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 11463689 - 11463630
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 60  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||    
T  11463689 aatagtcaattgattctctactttctcattcattctacaatttctattttagggttttag 11463630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 45486353 - 45486394
Alignment:
Q  119 aaattttgccacactaatatgaaatgtctagatccgcccctg 160  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  45486353 aaattttgccacactaatatgcaatgtctagatccgcccctg 45486394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 11462767 - 11462730
Alignment:
Q  123 tttgccacactaatatgaaatgtctagatccgcccctg 160  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  11462767 tttgccacactaatatgaaatgtctagattcgcccctg 11462730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 26905396 - 26905332
Alignment:
Q  57 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 121  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26905396 ttaggcctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 26905332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 36615644 - 36615708
Alignment:
Q  57 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 121  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36615644 ttaggcctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 36615708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 25069615 - 25069674
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25069615 aatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 25069674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 26905720 - 26905661
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26905720 aatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 26905661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 36615320 - 36615379
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36615320 aatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 36615379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 52118645 - 52118704
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52118645 aatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 52118704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 28211439 - 28211380
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 60  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28211439 aataatcaattgattctctactttctcattcattctacaattgcttttttagggttttag 28211380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 26556973 - 26557032
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 60  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||    
T  26556973 aatagtcaattaattctctactttctcattcattctacaattgcttttttaggattttag 26557032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 25070869 - 25070912
Alignment:
Q  119 aaattttgccacactaatatgaaatgtctagatccgcccctgat 162  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  25070869 aaattttgccacactaatatgcaatgtctagatccgcccctgat 25070912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 26903105 - 26903063
Alignment:
Q  119 aaattttgccacactaatatgaaatgtctagatccgcccctga 161  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  26903105 aaattttgccacactaatatgcaatgtctagatccgcccctga 26903063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 36617935 - 36617977
Alignment:
Q  119 aaattttgccacactaatatgaaatgtctagatccgcccctga 161  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  36617935 aaattttgccacactaatatgcaatgtctagatccgcccctga 36617977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 26557644 - 26557685
Alignment:
Q  119 aaattttgccacactaatatgaaatgtctagatccgcccctg 160  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  26557644 aaattttgccacactaatatgacatgtctagatccgcccctg 26557685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 28210921 - 28210880
Alignment:
Q  119 aaattttgccacactaatatgaaatgtctagatccgcccctg 160  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  28210921 aaattttgccacactaatatgcaatgtctagatccgcccctg 28210880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 52119126 - 52119167
Alignment:
Q  119 aaattttgccacactaatatgaaatgtctagatccgcccctg 160  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  52119126 aaattttgccacactaatatgacatgtctagatccgcccctg 52119167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 2125769 - 2125806
Alignment:
Q  123 tttgccacactaatatgaaatgtctagatccgcccctg 160  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  2125769 tttgccacactaatatgcaatgtctagatccgcccctg 2125806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 37130547 - 37130596
Alignment:
Q  193 aagtgccccaccgtgtttttatatannnnnnncctataaatgtttgaggc 242  Q
    |||||||||||||||||||||||||       ||||||||||||||||||    
T  37130547 aagtgccccaccgtgtttttatatatttttttcctataaatgtttgaggc 37130596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25634200 - 25634141
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25634200 aatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 25634141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 17074909 - 17074967
Alignment:
Q  2 atagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17074909 atagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 17074967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 17075326 - 17075385
Alignment:
Q  58 taggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttactt 117  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||    
T  17075326 taggcctccaatttcaagctatcaacctgacatccaagatgaggtatgtaaagcttactt 17075385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 18113523 - 18113464
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 60  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  18113523 aatattcaattgattctctactttttcattcattctacaattgcttttttagggttttag 18113464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 9047525 - 9047488
Alignment:
Q  123 tttgccacactaatatgaaatgtctagatccgcccctg 160  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9047525 tttgccacactaatatgaaatgtctagatccgcccctg 9047488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 424023 - 423987
Alignment:
Q  123 tttgccacactaatatgaaatgtctagatccgcccct 159  Q
    |||||||||||||||||||||||||||||||||||||    
T  424023 tttgccacactaatatgaaatgtctagatccgcccct 423987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 424521 - 424471
Alignment:
Q  8 aattgattctctactttctcattcattctacaattgcttttttggggtttt 58  Q
    |||||||||||||| ||||| |||||||||| ||||||||||| |||||||    
T  424521 aattgattctctaccttctcgttcattctacgattgcttttttagggtttt 424471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 18108399 - 18108361
Alignment:
Q  123 tttgccacactaatatgaaatgtctagatccgcccctga 161  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  18108399 tttgccacactaatataaaatgtctagatccgcccctga 18108361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 17077002 - 17077039
Alignment:
Q  122 ttttgccacactaatatgaaatgtctagatccgcccct 159  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  17077002 ttttgtcacactaatatgaaatgtctagatccgcccct 17077039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 13475593 - 13475552
Alignment:
Q  121 attttgccacactaatatgaaatgtctagatccgcccctgat 162  Q
    |||||||||||| ||||| |||||||| ||||||||||||||    
T  13475593 attttgccacaccaatatcaaatgtctggatccgcccctgat 13475552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 45067497 - 45067438
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45067497 aatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 45067438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 8904153 - 8904217
Alignment:
Q  57 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 121  Q
    ||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||    
T  8904153 ttaggcctccaatttcatgctatcatcctgtcatctaagatgaggtacgtaaagcttacttgaaa 8904217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 45066094 - 45066030
Alignment:
Q  57 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 121  Q
    |||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||    
T  45066094 ttaggcctccaatttcaagctatcttcctgaaatccaagatgaggtacgtaaagcttacttgaaa 45066030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 8903586 - 8903642
Alignment:
Q  1 aatagtcaattgattctctactttctcattcattctacaattgcttttttggggttt 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  8903586 aatagtcaattgattctctactttctcattcattctacaattgctattttagggttt 8903642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 153
Target Start/End: Complemental strand, 45065922 - 45065888
Alignment:
Q  119 aaattttgccacactaatatgaaatgtctagatcc 153  Q
    |||||||||||||||||||||||||||||||||||    
T  45065922 aaattttgccacactaatatgaaatgtctagatcc 45065888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 8904430 - 8904463
Alignment:
Q  123 tttgccacactaatatgaaatgtctagatccgcc 156  Q
    ||||||||||||||||||||||||||||||||||    
T  8904430 tttgccacactaatatgaaatgtctagatccgcc 8904463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 2917655 - 2917615
Alignment:
Q  122 ttttgccacactaatatgaaatgtctagatccgcccctgat 162  Q
    ||||||||||| ||||| |||||||||||||||||| ||||    
T  2917655 ttttgccacaccaatatcaaatgtctagatccgcccatgat 2917615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 47286643 - 47286603
Alignment:
Q  121 attttgccacactaatatgaaatgtctagatccgcccctga 161  Q
    |||||||||||| ||||| |||||||| |||||||||||||    
T  47286643 attttgccacaccaatatcaaatgtctggatccgcccctga 47286603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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