View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_94 (Length: 252)
Name: NF9303_low_94
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_94 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 38305426 - 38305650
Alignment:
| Q |
18 |
gaaatgtaatctaggccttcgaagctatgtcactggaacaattggaaactggtgatgaggtagatcaatttgattcgcggtttctacctatatgtgcttc |
117 |
Q |
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| T |
38305426 |
gaaatgtaatctaggccttcgaagctatgtcactggaacaattggaaactggtgatgaggtagatcaatttgattcgcggtttctacctatatgtgcttc |
38305525 |
T |
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| Q |
118 |
tatgatcctttcaaatgattttccctttgagttttttgagcgcgaggggatgaggaacttcatgaaggtcttaaatccaaatattgttttgcctcctgta |
217 |
Q |
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| T |
38305526 |
tatgatcctttcaaatgattttccctttgagttttttgagcgcgaggggatgaggaacttcatgaaggtcttaaatccaaatattgttttgcctcctgta |
38305625 |
T |
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| Q |
218 |
gatgttattgaggcttatgtctctg |
242 |
Q |
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| T |
38305626 |
gatgttattgaggcttatgtctctg |
38305650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 110 - 240
Target Start/End: Original strand, 38320344 - 38320474
Alignment:
| Q |
110 |
tgtgcttctatgatcctttcaaatgattttccctttgagttttttgagcgcgaggggatgaggaacttcatgaaggtcttaaatccaaatattgttttgc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| ||| |
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| T |
38320344 |
tgtgcttctatgatcctttcaaatgattttccctttgatttttttgagcgcgagggtatgagtaacttcatgaaggtcttaaatccaaatgctgttatgc |
38320443 |
T |
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| Q |
210 |
ctcctgtagatgttattgaggcttatgtctc |
240 |
Q |
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| T |
38320444 |
ctcctataaatgttattaaggcttatgtctc |
38320474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 237
Target Start/End: Original strand, 38316242 - 38316373
Alignment:
| Q |
106 |
tatatgtgcttctatgatcctttcaaatgattttccctttgagttttttgagcgcgaggggatgaggaacttcatgaaggtcttaaatccaaatattgtt |
205 |
Q |
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|||||| ||||||||||||||| || ||||||| |||||| | ||||| |||| ||||| |||||||| | || || |||||||||||||| |||| |
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| T |
38316242 |
tatatgcgcttctatgatccttgcacatgatttgccctttaattttttggagctcgaggtaatgaggaagtacactgagttcttaaatccaaatgctgtt |
38316341 |
T |
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| Q |
206 |
ttgcctcctgtagatgttattgaggcttatgt |
237 |
Q |
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| T |
38316342 |
atacctccgacaaatgttattgaggcttatgt |
38316373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 38325090 - 38325154
Alignment:
| Q |
109 |
atgtgcttctatgatcctttcaaatgattttccctttgagttttttgagcgcgaggggatgagga |
173 |
Q |
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| T |
38325090 |
atgtgcttctatgatccttgcacttgatttaccctttgattttttggagcacgagggaatgagga |
38325154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 38312910 - 38312963
Alignment:
| Q |
187 |
cttaaatccaaatattgttttgcctcctgtagatgttattgaggcttatgtctc |
240 |
Q |
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| T |
38312910 |
cttaaatccaaatgttgttatgcctccttcaaatgttcttgaggcttatgtctc |
38312963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 38851102 - 38851035
Alignment:
| Q |
107 |
atatgtgcttctatgatcctttcaaatgattttccctttgagttttttgagcgcgaggggatgaggaa |
174 |
Q |
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| T |
38851102 |
atatgtgcttctacgatccttgcacatgatttgccctttcattttttcgagctcgagggaatgaggaa |
38851035 |
T |
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