View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9303_low_96 (Length: 250)
Name: NF9303_low_96
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_96 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 6 - 246
Target Start/End: Original strand, 30019746 - 30019982
Alignment:
| Q |
6 |
agaagcaaagggaaacaagttagaggagaaaagggttaaaggtgggagagtgaagaagacaacaaaagtgccaaggtttgcatttcagacaagaagtgtt |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30019746 |
agaagaaaagggaaacaagttagaggagaaaagggttaaaggtgggagagtgaagaagaccacaaaagtgccaaggtttgcatttcagacaagaagtgtt |
30019845 |
T |
|
| Q |
106 |
gatgatattttggatgatggttatcgttggaggaaatatggacaaaaagctgtcaagaacagcaagtatcccaggtataaaatgcatgtttgtgtgtgaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30019846 |
gatgatattttggatgatggttatcgttggaggaaatatggacaaaaagctgtcaagaacagcaagtatcccaggtataaaatgcatgtttgtgtgtgaa |
30019945 |
T |
|
| Q |
206 |
atcatcatttggttttcttctatatatgttgcatatatatt |
246 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30019946 |
atcatcatttggttttcttc----tatgttgcatatatatt |
30019982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 9606879 - 9606942
Alignment:
| Q |
118 |
gatgatggttatcgttggaggaaatatggacaaaaagctgtcaagaacagcaagtatcccaggt |
181 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||||||||||| || |||| ||| | |||||||| |
|
|
| T |
9606879 |
gatgatggttatagatggaggaaatatggccaaaaagctgttaaaaacaacaaatttcccaggt |
9606942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 9834450 - 9834513
Alignment:
| Q |
118 |
gatgatggttatcgttggaggaaatatggacaaaaagctgtcaagaacagcaagtatcccaggt |
181 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||||||||||| || |||| ||| | |||||||| |
|
|
| T |
9834450 |
gatgatggttatagatggaggaaatatggccaaaaagctgttaaaaacaacaaatttcccaggt |
9834513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University