View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_97 (Length: 250)
Name: NF9303_low_97
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_97 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 12976434 - 12976678
Alignment:
| Q |
6 |
agaagcataggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggtaagattgatgctagtagtaaagattctaataatgttt |
105 |
Q |
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| T |
12976434 |
agaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggtaagattgatgctagtagtaaagattctaataatgttt |
12976533 |
T |
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| Q |
106 |
cttcctttggtaatagaaatagatcatttggtagaaacattgttagtaaagataaagattcatctcaatttggtcattttagatcactttcttggagtgt |
205 |
Q |
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| T |
12976534 |
cttcctttggtaatagaaatagatcatttagtagaaacaatgttagtaaagataaagattcatctcaatttggtcattttagatcactttcttggagtgt |
12976633 |
T |
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| Q |
206 |
atcaaggaattggtcagctgcaaaacaactacaagcactagggac |
250 |
Q |
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| T |
12976634 |
atcaaggaattggtcagctgcaaaacaactacaagcactagggac |
12976678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 13008833 - 13009077
Alignment:
| Q |
6 |
agaagcataggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggtaagattgatgctagtagtaaagattctaataatgttt |
105 |
Q |
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| T |
13008833 |
agaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggtaagattgatgctagtagtaaagattctaataatgttt |
13008932 |
T |
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| Q |
106 |
cttcctttggtaatagaaatagatcatttggtagaaacattgttagtaaagataaagattcatctcaatttggtcattttagatcactttcttggagtgt |
205 |
Q |
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| T |
13008933 |
cttcctttggtaatagaaatagatcatttggtagaaacattgttagtaaagataaagattcatcacaagttggtcattttagatcactttcttggagtgt |
13009032 |
T |
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| Q |
206 |
atcaaggaattggtcagctgcaaaacaactacaagcactagggac |
250 |
Q |
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| T |
13009033 |
atcaaggaattggtcagctgcaaaacaactacaagcactagggac |
13009077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 13012392 - 13012635
Alignment:
| Q |
6 |
agaagcataggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggtaagattgatgctagtagtaaagattctaataatgttt |
105 |
Q |
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| T |
13012392 |
agaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggtatgattgatgctagtagtaaagattctaataatgttt |
13012491 |
T |
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| Q |
106 |
cttcctttggtaatagaaatagatcatttggtagaaacattgttagtaaagataaagattcatctcaatttggtcattttagatcactttcttggagtgt |
205 |
Q |
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| T |
13012492 |
cttcctttggtaatagaaatagatcatttggtagaaacaatgttaatggagataaagggtcatctcaagttgg-cattttagatcactttcttggagtgt |
13012590 |
T |
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| Q |
206 |
atcaaggaattggtcagctgcaaaacaactacaagcactagggac |
250 |
Q |
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| T |
13012591 |
atcaaggaattggtcagctgcaaaacaactacaagcaatagggac |
13012635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 13031189 - 13031432
Alignment:
| Q |
6 |
agaagcataggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggtaagattgatgctagtagtaaagattctaataatgttt |
105 |
Q |
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| T |
13031189 |
agaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggtatgattgatgctagtagtaaagattctaataatgttt |
13031288 |
T |
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| Q |
106 |
cttcctttggtaatagaaatagatcatttggtagaaacattgttagtaaagataaagattcatctcaatttggtcattttagatcactttcttggagtgt |
205 |
Q |
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| T |
13031289 |
cttcctttggtaataaaaatagatcatttggtagaaacaatgttaatagagataaagggtcatctcaagttggtcattttagatcactttcaaggagtgt |
13031388 |
T |
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| Q |
206 |
atcaaggaattggtcagctgcaaaacaactacaagcactagggac |
250 |
Q |
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| T |
13031389 |
atcaagaaattggtcagctg-aaaacaactacaagcaatagggac |
13031432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 12997594 - 12997657
Alignment:
| Q |
6 |
agaagcataggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggta |
69 |
Q |
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| T |
12997594 |
agaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttgatttagaaattggta |
12997657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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