View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9304_low_11 (Length: 293)
Name: NF9304_low_11
Description: NF9304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9304_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 13233758 - 13234048
Alignment:
| Q |
1 |
catggagtgctagtaatagtgcagctttcttgaaattcacaccctcaagacttaaaaatgagaacaaggtgcaaaagcctccaaggtaaagcatttattc |
100 |
Q |
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| T |
13233758 |
catggagtgctagtaatagtgcagctttcttgaaattcacaccctcaagacttaaaaatgagaacaaggtgcaaaagcctccaaggtaaagcatttattc |
13233857 |
T |
|
| Q |
101 |
aacaatactaatttatatgattactactaacatggtttacaatacatgattattgattgaatggtaaattgatatatgcaatcaaaattagatgtaaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13233858 |
aacaatactaatttatatgattactactaacatggtttacaatacatgattattgattgaatggtaaattgatatatgcaatcaaaattagatgtaaact |
13233957 |
T |
|
| Q |
201 |
tgtaatataccatattgtttttgtgtgatgtgcagccatgcttcccctggcatctacacatactcaagtgaaatccttccagcaacaccaa |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13233958 |
tgtaatataccatattgtttttgtgtgatgtgcagccatgcttcccctggcatctacacatactcaagtgaaatccttccagcaacaccaa |
13234048 |
T |
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