View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9304_low_2 (Length: 525)
Name: NF9304_low_2
Description: NF9304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9304_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 112 - 508
Target Start/End: Original strand, 11399038 - 11399434
Alignment:
| Q |
112 |
tggatgcaacgcttctcaccatcaaaaactgttgtattttaattcaagttagttaaaacagttagatttgttagcaactgttttggaagttggttagaag |
211 |
Q |
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| T |
11399038 |
tggatgcaaagcttctcacgataaaaaactgttgtattttaattcaagttagttaaaacagttagatttgttagcaactgttttggaagttggttagaag |
11399137 |
T |
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| Q |
212 |
agtagttgcttgttttacaagttagttacatatgcttagtataaattattgtaatgttcacttttcattcactactgagaatatagaattacaatcattt |
311 |
Q |
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| T |
11399138 |
agtagttgcttgttttacaagttagttacatatgcttagtataaattattgtaatgttcacttttcattcactactgagaatatagaattacaatcattt |
11399237 |
T |
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| Q |
312 |
gtatctatctcttttctctctcaatttctctataaatcattcatttcttgagtaacaagtaattgctgtgctaacaaaaacacccaacttcaaatccacg |
411 |
Q |
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| T |
11399238 |
gtatctatctcttttctctctcaatttctctataaatcattcatttcttgagtaacaagtaattgctgtgctaacaaaaacacccaacttcaaatccacg |
11399337 |
T |
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| Q |
412 |
accatcctctacaaaacagaacagcagcgatttgggaacatacaatgacaattatatacgaactcacccatttggcttcaactccaaacagactaac |
508 |
Q |
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| T |
11399338 |
accatcctctacaaaacagaacagcagcgatttgggaacatacaatgacaattatatacgaactcacccatttggcttcaactccaaacagactaac |
11399434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 141 - 278
Target Start/End: Original strand, 36612695 - 36612830
Alignment:
| Q |
141 |
tgttgtattttaattcaagttagttaaaacagttagatttgttagcaactgttttggaagttggttagaagagtagttgcttgttttacaagttagttac |
240 |
Q |
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| T |
36612695 |
tgttgtattttaatttaagttagttaaaacagttaggtttgttgtcaactgttttagaagttggttag-agagcggttgcttgctttac-agttagttac |
36612792 |
T |
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| Q |
241 |
atatgcttagtataaattattgtaatgttcacttttca |
278 |
Q |
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| T |
36612793 |
acatgcttggtataaatgattatagtgttcacttttca |
36612830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 36614006 - 36614047
Alignment:
| Q |
291 |
aatatagaattacaatcatttgtatctatctcttttctctct |
332 |
Q |
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| T |
36614006 |
aatatagaattacaatccattgcatctatctcttttctctct |
36614047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 30915288 - 30915356
Alignment:
| Q |
274 |
tttcattcactactgagaatatagaattacaatcatttgtatctatctcttttctctctcaatttctct |
342 |
Q |
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| T |
30915288 |
tttcattcactaatgagaatatagaattacaatctattgcatatatctcttatctctctcaatttctct |
30915356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 30904475 - 30904543
Alignment:
| Q |
274 |
tttcattcactactgagaatatagaattacaatcatttgtatctatctcttttctctctcaatttctct |
342 |
Q |
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| T |
30904475 |
tttcattcattaatgagaatatagaattacaatctattgcatatatctcttctctctctcaatttctct |
30904543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 393
Target Start/End: Original strand, 8156201 - 8156319
Alignment:
| Q |
274 |
tttcattcactactgagaatatagaattacaatcatttgtatctatctcttttctctctcaatttctctataaatcattcatttcttgagtaacaag-ta |
372 |
Q |
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| T |
8156201 |
tttcattcactaatgagaatatagaattacaatccattcaatctaactcttt--tctctcaatttctccctaaatcatttgttgctagagtaacaagaaa |
8156298 |
T |
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| Q |
373 |
attgctgtgctaacaaaaaca |
393 |
Q |
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|||| |||||||||| ||||| |
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| T |
8156299 |
attgttgtgctaacacaaaca |
8156319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 43695266 - 43695224
Alignment:
| Q |
141 |
tgttgtattttaattcaagttagttaaaacagttagatttgtt |
183 |
Q |
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| T |
43695266 |
tgttgtattttaattcaagttagttaaaacagttaggtttgtt |
43695224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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