View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9304_low_4 (Length: 405)
Name: NF9304_low_4
Description: NF9304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9304_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 42591140 - 42590766
Alignment:
| Q |
18 |
attagcccaaccccaaagtatcctacgattcttactttgatcaaaaaatgacttggaagcatagaaattaccatagtcatatctaagtccaccccaacca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42591140 |
attagcccaaccccaaagtatcctacgattcttactttgatcaaaaaatgacttggaagcatagaaattaccatagtcatatctaagtccaccccaacca |
42591041 |
T |
|
| Q |
118 |
tcctctgaagtattgcttggaatatacttatccttatcagttaaatatgtgcccaatgtgtagtactcaaatctagtcatgtcaagactattctttaaga |
217 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42591040 |
tcctctgaagtattacttggaatatacttatccttatcagttaaatatgtgcccaatgtgtagtactcaaatctagtcatgtcaagactattctttaaga |
42590941 |
T |
|
| Q |
218 |
catgcttaacatgattaccttcaattgatgtatccaaccctactttacctttaagtgaaaccgggtaaaaatcaggacactcccacatacccgtagtagt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42590940 |
catgcttaacatgattaccttcaattgatgtatccaaccctactttacctttaagtgaaaccgggtaaaaatcaggacactcccacatacccgtagtagt |
42590841 |
T |
|
| Q |
318 |
ttttgaatggatcgggtgtttggcccgaacccatttcacaaaatccctactcctatacaagtaggccatccctct |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42590840 |
ttttgaatggatcgggtgtttggcccgaacccatttcacaaaatccctactcctatacaagtaggccatccctct |
42590766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 47 - 383
Target Start/End: Original strand, 25951992 - 25952328
Alignment:
| Q |
47 |
tcttactttgatcaaaaaatgacttggaagcatagaaattaccatagtcatatctaagtccaccccaaccatcctctgaagtattgcttggaatatactt |
146 |
Q |
| |
|
|||| ||| ||||||| ||||| |||||||||||||| || ||||| ||||||||||| ||||||||||||||||| ||||| || || |||||||| |
|
|
| T |
25951992 |
tcttgcttggatcaaagaatgatttggaagcatagaagttgccataatcatatctaaggccaccccaaccatcctcggaagttttatccggtatatactt |
25952091 |
T |
|
| Q |
147 |
atccttatcagttaaatatgtgcccaatgtgtagtactcaaatctagtcatgtcaagactattctttaagacatgcttaacatgattaccttcaattgat |
246 |
Q |
| |
|
|||||||| | ||| || || | ||| ||||| ||| | || ||||||||||| |||||||||| ||||| |||||| ||||||| | ||| |
|
|
| T |
25952092 |
atccttattttggatatacgttccaactgtatagtattcatacctcgtcatgtcaaggctattctttagcacatgtttaacactattacctatcgtcgat |
25952191 |
T |
|
| Q |
247 |
gtatccaaccctactttacctttaagtgaaaccgggtaaaaatcaggacactcccacatacccgtagtagtttttgaatggatcgggtgtttggcccgaa |
346 |
Q |
| |
|
| || ||||| ||| |||| | ||||||||||||||||| |||||||||||||| || || || | || || |||||||||||||| || |
|
|
| T |
25952192 |
gcgtctaacccgtttttcccttccaaagaaaccgggtaaaaatccggacactcccacatcccagtggttttagccgagtgaatcgggtgtttggctcggg |
25952291 |
T |
|
| Q |
347 |
cccatttcacaaaatccctactcctatacaagtaggc |
383 |
Q |
| |
|
|||||| |||||||||||||| ||||| || ||||| |
|
|
| T |
25952292 |
tccatttgacaaaatccctacttctatataaataggc |
25952328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 4142564 - 4142602
Alignment:
| Q |
58 |
tcaaaaaatgacttggaagcatagaaattaccatagtca |
96 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
4142564 |
tcaaaaaatgactttgaagcataaaaattaccatagtca |
4142602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 4117921 - 4117965
Alignment:
| Q |
57 |
atcaaaaaatgacttggaagcatagaaattaccatagtcatatct |
101 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||||| |||| |
|
|
| T |
4117921 |
atcaaaaaatgactttgaagcataaaatttaccatagtcaaatct |
4117965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 42006345 - 42006292
Alignment:
| Q |
55 |
tgatcaaaaaatgacttggaagcatagaaattaccatagtcatatctaagtcca |
108 |
Q |
| |
|
|||||| |||||| ||||||||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
42006345 |
tgatcataaaatgtcttggaagcatagaatataccataatcatacctaagtcca |
42006292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University