View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9304_low_5 (Length: 363)
Name: NF9304_low_5
Description: NF9304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9304_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 354
Target Start/End: Complemental strand, 26783881 - 26783544
Alignment:
| Q |
16 |
cacaactatcagatgaagctgctgatgagttgattacaggctatgtaaaaataaggggtaggggaaaattctccggaagcagcaaaaaggtgatacaaag |
115 |
Q |
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| T |
26783881 |
cacaactatcagatgaagctgctgatgagttgattacaggctatgtaaaaataaggggtaggggaaaattctccggaagcagcaaaaaggtgatacaaag |
26783782 |
T |
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| Q |
116 |
tgaattacttgatcttagaattatgcttattttcannnnnnnncatgtttatctgttgtgtatgttaatcttgcctatctatcaatttaattaacaggta |
215 |
Q |
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| T |
26783781 |
tgaattacttgatcttagaattatgcttattttcattttttttcatgtttatctgttgtgtatgttaatcttgcctatctatcaatt-aattaacaggta |
26783683 |
T |
|
| Q |
216 |
ataacggcaactccaaggcagattgagagtctattacgacttagtgaagcattggctcggattcgcttctcagaattggttagttgagcttgcttggtct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26783682 |
ataacggcaactccaaggcagattgagagtctattacgacttagtgaagcattggctcggattcgcttctcagaatcggttagttgagcttgcttggtct |
26783583 |
T |
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| Q |
316 |
cttcctgatttgtagataaaaaatagcatgcagaattat |
354 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |
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| T |
26783582 |
cttcctgatttgtagataaaaaatagcatccagaattat |
26783544 |
T |
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