View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9305_high_3 (Length: 375)
Name: NF9305_high_3
Description: NF9305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9305_high_3 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 357
Target Start/End: Original strand, 33990235 - 33990579
Alignment:
| Q |
13 |
cagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990235 |
cagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaa |
33990334 |
T |
|
| Q |
113 |
tctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaaacttttgaacacaaattcaatgaagcta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990335 |
tctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaaacttttgaacacaaattcaatgaagcta |
33990434 |
T |
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| Q |
213 |
aaccacctttcaagcatcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggagcttataaggga |
312 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990435 |
aaccacctttcaagcgtcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggagcttataaggga |
33990534 |
T |
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| Q |
313 |
tggttgctccacccttgtgttgactggcttaggaggattggggaa |
357 |
Q |
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|||| ||||||||||||||||||| |||||||||||||| ||||| |
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| T |
33990535 |
tggtagctccacccttgtgttgacgggcttaggaggattagggaa |
33990579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 13 - 357
Target Start/End: Original strand, 33950759 - 33951094
Alignment:
| Q |
13 |
cagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatgattcctatg------ttgttgatgag |
106 |
Q |
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| T |
33950759 |
cagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgtacatgttcttctgagaatgattcctatggctatgttgttgaggag |
33950858 |
T |
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| Q |
107 |
aaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaaacttttgaacacaaattcaatg |
206 |
Q |
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||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||||| |
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| T |
33950859 |
aaccaatctcttactgtaaatgatgttgaagagacgctttataagaccagagaaattcttgagcttctcaaccatgaa---------------ttcaatg |
33950943 |
T |
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| Q |
207 |
aagctaaaccacctttcaagcatcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggagcttat |
306 |
Q |
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||| | || || |||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33950944 |
aagatggacaacttttcaagcgtcctttcaatgttcctgaaaatcaaaaattcactgttgggttggatataccatttagcaagttgaaaatggagcttct |
33951043 |
T |
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| Q |
307 |
aagggatggttgctccacccttgtgttgactggcttaggaggattggggaa |
357 |
Q |
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|||| |||| ||||||| |||||||||||||| ||||||||||||||||| |
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| T |
33951044 |
gaggggtggtagctccacacttgtgttgactggtttaggaggattggggaa |
33951094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 33959406 - 33959571
Alignment:
| Q |
13 |
cagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaa |
112 |
Q |
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|||||| ||||| || | |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33959406 |
cagagaggaaataaatagtctaatagaagaaaatgatgcaggagaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaa |
33959505 |
T |
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| Q |
113 |
tctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaac |
178 |
Q |
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| T |
33959506 |
tctcttattgtaaatgatgttgaagaaacactttataagccaagagaaattcttgagcttctcaac |
33959571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 52 - 178
Target Start/End: Original strand, 33973447 - 33973573
Alignment:
| Q |
52 |
agaagaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataag |
151 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
33973447 |
agaagaaagtgcatgcaaatcttcttttgagaatgattcctacgttgttgatgagaaccaatctcttattgtaaatgatgtcgaagagacactttacaag |
33973546 |
T |
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| Q |
152 |
gccagagaaattcttgagcttctcaac |
178 |
Q |
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| T |
33973547 |
gccagagaaattcttgagcttctcaac |
33973573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 245 - 357
Target Start/End: Original strand, 33973577 - 33973689
Alignment:
| Q |
245 |
gaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggagcttataagggatggttgctccacccttgtgttgactggcttag |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||||| |||||||||||||| |||| |
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| T |
33973577 |
gaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggagcttctgaggggtggtagctccacacttgtgttgactggtttag |
33973676 |
T |
|
| Q |
345 |
gaggattggggaa |
357 |
Q |
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||||||||||||| |
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| T |
33973677 |
gaggattggggaa |
33973689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 85 - 354
Target Start/End: Original strand, 10335 - 10607
Alignment:
| Q |
85 |
tgattcctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaa |
184 |
Q |
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|||||||||||| |||||||| ||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||| ||||| ||| | ||| |
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| T |
10335 |
tgattcctatgtcgttgatgataaccaatctcttacggtaaatgatgttaaagagacactttacaaggccagagaaattcttgaacttcttaacaaggaa |
10434 |
T |
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| Q |
185 |
acttttgaacacaaattcaatgaagctaaaccacc---tttcaagcatcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccat |
281 |
Q |
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| ||||||||| ||||| |||||| | |||||| |||||| |||||| | |||||| ||||||||| |||||| ||||||| | |||||||||| |
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| T |
10435 |
aattttgaacagaaatttaatgaaaatggaccaccaatattcaagggtccttttggtgttccagaaaatccagaattcattgttgggattgatataccat |
10534 |
T |
|
| Q |
282 |
ttagcaagttgaaaatggagcttataagggatggttgctccacccttgtgttgactggcttaggaggattggg |
354 |
Q |
| |
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|||||||||||||||||||||| | || ||||| |||| ||||||||||||||||| || ||||| ||||| |
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| T |
10535 |
ttagcaagttgaaaatggagctattgagagatggaagctcaacccttgtgttgactggtttgggagggttggg |
10607 |
T |
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