View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9305_low_17 (Length: 237)
Name: NF9305_low_17
Description: NF9305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9305_low_17 |
 | |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 463224 - 463438
Alignment:
| Q |
16 |
acaaggatggaaggaagcatatatgtgtaaagctaggctgggggagggcgaacaacaccgtatcagccgacaggagcagcagttcagcgctgggagaggg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
463224 |
acaaggatggaaggaagcatatatgtgtaaagctaggctgggggagggcgaacaacaccgtatcagccgacaggagcagcagttcagtgctgggagaggg |
463323 |
T |
|
| Q |
116 |
cgaacagcagcctgctatgcatgctgtcagcactatatcagctggcggcagcaattccacacaacagcagcacatcaggtggcagaaaccaggcac-gga |
214 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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|
| T |
463324 |
cgaacagcaacctgctatgcgtgctgtcagcaccatatcagctggcggcagcaattccacacagcagcagcacatcaggtggcagaaaccaggcacggga |
463423 |
T |
|
| Q |
215 |
aggcttaagtataat |
229 |
Q |
| |
|
|||||||||| |||| |
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|
| T |
463424 |
aggcttaagtgtaat |
463438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 35899696 - 35899482
Alignment:
| Q |
16 |
acaaggatggaaggaagcatatatgtgtaaagctaggctgggggagggcgaacaacaccgtatcagccgacaggagcagcagttcagcgctgggagaggg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
35899696 |
acaaggatggaaggaagcatatatgtgtaaagctaggctgggggagggcgaacaacaccgtatcagccgacaggagcagcagttcagtgctgggagaggg |
35899597 |
T |
|
| Q |
116 |
cgaacagcagcctgctatgcatgctgtcagcactatatcagctggcggcagcaattccacacaacagcagcacatcaggtggcagaaaccaggcac-gga |
214 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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|
| T |
35899596 |
cgaacagcaacctgctatgcgtgctgtcagcaccatatcagctggcggcagcaattccacacagcagcagcacatcaggtggcagaaaccaggcacggga |
35899497 |
T |
|
| Q |
215 |
aggcttaagtataat |
229 |
Q |
| |
|
|||||||||| |||| |
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|
| T |
35899496 |
aggcttaagtgtaat |
35899482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 34673264 - 34673332
Alignment:
| Q |
90 |
agcagcagttcagcgctgggagagggcgaacagcagcctgctatgcatgctgtcagcactatatcagct |
158 |
Q |
| |
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||||| |||||||| || ||||||||||||||||||||||||||| |||||||| |||| |||||||| |
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|
| T |
34673264 |
agcagtagttcagccatgagagagggcgaacagcagcctgctatgcgtgctgtcaacactgtatcagct |
34673332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 34673188 - 34673244
Alignment:
| Q |
16 |
acaaggatggaaggaagcatatatgtgtaaagctaggctgggggagggcgaacaaca |
72 |
Q |
| |
|
||||||||||||||||||| || | || || ||| || ||||||||||||||||||| |
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|
| T |
34673188 |
acaaggatggaaggaagcaaatttatgcaaggctcggttgggggagggcgaacaaca |
34673244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 52052632 - 52052846
Alignment:
| Q |
16 |
acaaggatggaaggaagcatatatgtgtaaagctaggctgggggagggcgaacaacaccgtatcagccgacaggagcagcagttcagcgctgggagaggg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
52052632 |
acaaggatggaaggaagcatatatgtgtaaagctaggctgggggagggcgaacaacaccgtatcagccgacaggagcagcagttcagtgctgggagaggg |
52052731 |
T |
|
| Q |
116 |
cgaacagcagcctgctatgcatgctgtcagcactatatcagctggcggcagcaattccacacaacagcagcacatcaggtggcagaaaccaggcac-gga |
214 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
52052732 |
cgaacagcaacctgctatgcgtgctgtcagcaccatatcagctggcggcagcaattccacacagcagcagcacatcaggtggcagaaaccaggcacggga |
52052831 |
T |
|
| Q |
215 |
aggcttaagtataat |
229 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
52052832 |
aggcttaagtgtaat |
52052846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 27 - 229
Target Start/End: Original strand, 53572155 - 53572358
Alignment:
| Q |
27 |
aggaagcatatatgtgtaaagctaggctgggggagggcgaacaacaccgtatcagccgacaggagcagcagttcagcgctgggagagggcgaacagcagc |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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|
| T |
53572155 |
aggaagcatatatgtgtaaagctaggctgggggagggcgaacaacaccgtatcagccgacaggagcagcagttcagtgctgggagagggcgaacagcaac |
53572254 |
T |
|
| Q |
127 |
ctgctatgcatgctgtcagcactatatcagctggcggcagcaattccacacaacagcagcacatcaggtggcagaaaccaggcac-ggaaggcttaagta |
225 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
53572255 |
ctgctatgcgtgctgtcagcaccatatcagctggcggcagcaattccacacagcagcagcacatcaggtggcagaaaccaggcacgggaaggcttaagtg |
53572354 |
T |
|
| Q |
226 |
taat |
229 |
Q |
| |
|
|||| |
|
|
| T |
53572355 |
taat |
53572358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 31357236 - 31357022
Alignment:
| Q |
16 |
acaaggatggaaggaagcatatatgtgtaaagctaggctgggggagggcgaacaacaccgtatcagccgacaggagcagcagttcagcgctgggagaggg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31357236 |
acaaggatggaaggaagcatatatgtgtaaagctaggctgggggagggcgaacaacaccgtatcagccgacaggagcagcagttcagtgctgggagaggg |
31357137 |
T |
|
| Q |
116 |
cgaacagcagcctgctatgcatgctgtcagcactatatcagctggcggcagcaattccacacaacagcagcacatcaggtggcagaaaccaggcac-gga |
214 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31357136 |
cgaacagcaacctgctatgcgtgctgtcagcaccatatcagctggcggcagcaattccacacagcagcagcacatcaggtggcagaaaccaggcacggga |
31357037 |
T |
|
| Q |
215 |
aggcttaagtataat |
229 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
31357036 |
aggcttaagtgtaat |
31357022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 16994521 - 16994311
Alignment:
| Q |
20 |
ggatggaaggaagcatatatgtgtaaagctaggctgggggagggcgaacaacaccgtatcagccgacaggagcagcagttcagcgctgggagagggcgaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16994521 |
ggatggaaggaagcatatatgtgtaaagctaggctgggggagggcgaacaacaccgtgtcagccgacaggagcagcagttcagtgctgggagagggcgaa |
16994422 |
T |
|
| Q |
120 |
cagcagcctgctatgcatgctgtcagcactatatcagctggcggcagcaattccacacaacagcagcacatcaggtggcagaaaccaggcac-ggaaggc |
218 |
Q |
| |
|
||||| |||||||||| |||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
16994421 |
cagcaacctgctatgcgtgctgtcagcaccatatcagctggcagcagcaattccacacagcagcagcacatcaggtagcagaaaccaggcacgggaaggc |
16994322 |
T |
|
| Q |
219 |
ttaagtataat |
229 |
Q |
| |
|
|||||| |||| |
|
|
| T |
16994321 |
ttaagtgtaat |
16994311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 27 - 229
Target Start/End: Original strand, 30197400 - 30197603
Alignment:
| Q |
27 |
aggaagcatatatgtgtaaagctaggctgggggagggcgaacaacaccgtatcagccgacaggagcagcagttcagcgctgggagagggcgaacagcagc |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
30197400 |
aggaagcatatatgtgtaaagctaggctgggggagggcgaacaacaccgtatcagccgacaggagcagcagttcagtgctgggagagggcgaacagcaac |
30197499 |
T |
|
| Q |
127 |
ctgctatgcatgctgtcagcactatatcagctggcggcagcaattccacacaacagcagcacatcaggtggcagaaaccaggcac-ggaaggcttaagta |
225 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30197500 |
ctgctatgcgtgctgtcagcaccatatcagctggcggcagcaattccacacagcagcagcacatcaggtggcagaaaccaggcacgggaaggcttaagtg |
30197599 |
T |
|
| Q |
226 |
taat |
229 |
Q |
| |
|
|||| |
|
|
| T |
30197600 |
taat |
30197603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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