View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9305_low_2 (Length: 781)

Name: NF9305_low_2
Description: NF9305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9305_low_2
NF9305_low_2
[»] chr1 (3 HSPs)
chr1 (1-432)||(29879203-29879632)
chr1 (502-767)||(29879758-29880023)
chr1 (158-258)||(1928965-1929067)
[»] chr3 (1 HSPs)
chr3 (67-396)||(25121080-25121409)
[»] chr4 (3 HSPs)
chr4 (123-428)||(38065660-38065965)
chr4 (158-258)||(38945680-38945782)
chr4 (186-286)||(19109534-19109636)
[»] chr8 (2 HSPs)
chr8 (292-396)||(22192086-22192190)
chr8 (157-377)||(18888934-18889156)
[»] chr7 (2 HSPs)
chr7 (232-396)||(37190293-37190460)
chr7 (73-144)||(37190509-37190579)
[»] chr2 (2 HSPs)
chr2 (145-235)||(39256440-39256530)
chr2 (140-263)||(35061025-35061150)
[»] chr6 (1 HSPs)
chr6 (311-428)||(26554111-26554227)
[»] chr5 (1 HSPs)
chr5 (195-327)||(36185604-36185736)


Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 29879203 - 29879632
Alignment:
Q  1 taattataactatatacactaattactcgagctaaaattcacatagacaacgacaaaattgtatgttggctttggtggaattctgtgtaactatgtaggg 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||||| | ||    
T  29879203 taattataactatatacactaatttctcgagctaaaattcacatagacaacgacaaaactgtatactggctttggtggaattctctgtaactatgcaagg 29879302  T
Q  101 ttgttcctatcggatttttcaggttttatttcagactcagatgatatcatgttggatgagctttcagctaactatcatggtctgatcatggccaaggatt 200  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  29879303 ttgtttctatcgggtttttcaggttttatttcagactcagatgatatcatgttggatgagctttcagctaactatcatgatctgatcgtggccaaggatt 29879402  T
Q  201 ttggttatgcggagctagtttgttattctgactcttgtttgcattaatcttattaatggtcccgtggagaaataccatgtttatgcagttcttatccaag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  29879403 ttggttatgcggagctagtttgttattctgactcttgtttgcattaatcctattaatggtcctgtggagaaataccatgtttatgcagtttttatccaag 29879502  T
Q  301 acataaaagatttgcttcttcaaagtactgttacggtttgtaacactctcagataagggaaccaatgtgcggatttccttgcaaagctcgaagcttgttt 400  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||    
T  29879503 acataaaagatttgcttcttcaaagtactgttacgg-ttgtaacactctcagataagggaaccaatgtgcggatttccttgcaaagctcggagctt-ctt 29879600  T
Q  401 ttgatactggccttattatttatgagtcccca 432  Q
    ||||||||||||||||||||||||||||||||    
T  29879601 ttgatactggccttattatttatgagtcccca 29879632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 502 - 767
Target Start/End: Original strand, 29879758 - 29880023
Alignment:
Q  502 taaattaaattcaaactcgatcccatgatttaattaaaagagtcttccaatcatattttatcctagcacttttgggtatgtaggggcttcctatgtacca 601  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29879758 taaattaaattcaaactcgatcccatgatttaattaaaagagtattccaatcatattttatcctagcacttttgggtatgtaggggcttcctatgtacca 29879857  T
Q  602 ttgaatatatcgcatgttataattaatattcaatttaattatacgttgacatgaaagttacctaaaaatatcaaaacttataataaacatttattcccat 701  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29879858 ttgaatatatcgcatgttataattaatattcaatttaattatacgttgacatgaaagttacctaaaaatatcaaaacttataataaacatttattcccat 29879957  T
Q  702 acacccnnnnnnnaatttcttttatgaaaaatatgaaggtcggaatcattgttctcagtttagaat 767  Q
    ||||||       |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29879958 acaccctttttttaatttcttttatgaaaaatatgaaggtcagaatcattgttctcagtttagaat 29880023  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 258
Target Start/End: Complemental strand, 1929067 - 1928965
Alignment:
Q  158 gagctttcagctaactatcatggtctgatcatggccaaggattttggttatgcggagctagtttgttattctga--ctcttgtttgcattaatcttatta 255  Q
    |||||||| |||| ||||||||||||||||||||  ||||||||  ||||| | ||||| ||||| || |||||  |||||||||||||||||||||| |    
T  1929067 gagctttctgctatctatcatggtctgatcatggagaaggatttgagttatacagagcttgtttgctactctgattctcttgtttgcattaatcttataa 1928968  T
Q  256 atg 258  Q
    |||    
T  1928967 atg 1928965  T

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Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 67 - 396
Target Start/End: Complemental strand, 25121409 - 25121080
Alignment:
Q  67 tggctttggtggaattctgtgtaactatgtagggttgttcctatcggatttttcaggttttatttcagactcagatgatatcatgttggatgagctttca 166  Q
    ||||||||||||||||||| ||||| ||  ||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||| ||| | || |    
T  25121409 tggctttggtggaattctgcgtaaccatacagggttgtttctatcgggtttttcaggttttattccagactcagatgatatcatgttggttgaacgttta 25121310  T
Q  167 gctaactatcatggtctgatcatggccaaggattttggttatgcggagctagtttgttattctga--ctcttgtttgcattaatcttattaatggtcccg 264  Q
    | || |||||||| ||| |||||||| |||||||| |||| ||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||    
T  25121309 gttatctatcatgatcttatcatggctaaggatttgggttgtgcggagctagtttgttattctgactctcttgttcgcattaatcttattaatggtcccg 25121210  T
Q  265 tggagaaataccatgtttatgcagttcttatccaagacataaaagatttgcttcttcaaagtactgttacggtttgtaacactctcagataagggaacca 364  Q
    |||||||||| ||||||||||  || |||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| || |||||||    
T  25121209 tggagaaata-catgtttatgtggtccttatccaagacataaaagatttgtttcttcaaagtactgttacggttggtcacactctcagagaa-ggaacca 25121112  T
Q  365 atgtgcggatttccttgcaaagctcgaagctt 396  Q
    || || |||||||||| ||||||||| |||||    
T  25121111 atatgtggatttccttacaaagctcggagctt 25121080  T

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Target: chr4 (Bit Score: 133; Significance: 1e-68; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 123 - 428
Target Start/End: Complemental strand, 38065965 - 38065660
Alignment:
Q  123 gttttatttcagactcagatgatatcatgttggatgagctttcagctaactatcatggtctgatcatggccaaggattttggttatgcggagctagtttg 222  Q
    ||||||||  ||||||||||||||| ||||||| ||||||||| |||| |||| ||||||| || |||||||| ||||| |||||| |||||||||||||    
T  38065965 gttttattctagactcagatgatattatgttggctgagctttcggctatctattatggtctaattatggccaaagatttgggttatacggagctagtttg 38065866  T
Q  223 ttattctgactct--tgtttgcattaatcttattaatggtcccgtggagaaataccatgtttatgcagttcttatccaagacataaaagatttgcttctt 320  Q
    |||||||||||||  | |||  || ||| |||||||||||||  |||||||||||||||||||| | ||  |||||||||||||||||||||| ||||||    
T  38065865 ttattctgactctcttatttaaatgaattttattaatggtcca-tggagaaataccatgtttatacggtcattatccaagacataaaagatttacttctt 38065767  T
Q  321 caaagtactgttacggtttgtaacactctcagataagggaaccaatgtgcggatttccttgcaaagctcgaagcttgtttttgatactggccttattatt 420  Q
    ||||||||| ||||||||||  |||||||||||||||||| | | |||||| |||||||| ||||||| ||| |||  |||||||  ||||||| |||||    
T  38065766 caaagtacttttacggtttggcacactctcagataagggacctattgtgcgaatttccttacaaagcttgaatctt-cttttgatgttggccttgttatt 38065668  T
Q  421 tatgagtc 428  Q
    ||||||||    
T  38065667 tatgagtc 38065660  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 158 - 258
Target Start/End: Original strand, 38945680 - 38945782
Alignment:
Q  158 gagctttcagctaactatcatggtctgatcatggccaaggattttggttatgcggagctagtttgttattctga--ctcttgtttgcattaatcttatta 255  Q
    |||||||| ||||  ||||| |||||||||||||| |||||||| |||||| |  |||| ||||| || || ||  |||||||||||||||||||||| |    
T  38945680 gagctttctgctatttatcacggtctgatcatggcgaaggatttgggttatacatagcttgtttgctactcggattctcttgtttgcattaatcttataa 38945779  T
Q  256 atg 258  Q
    |||    
T  38945780 atg 38945782  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 286
Target Start/End: Complemental strand, 19109636 - 19109534
Alignment:
Q  186 tcatggccaaggattttggttatgcggagctagtttgttattctga--ctcttgtttgcattaatcttattaatggtcccgtggagaaataccatgttta 283  Q
    ||||||| |||||||| ||||||   ||||||  |||||||||  |  ||||| ||||||| |||||| ||||||| ||||| |||| ||||||||||||    
T  19109636 tcatggctaaggatttgggttatatagagctaacttgttattcgaattctcttatttgcatcaatcttcttaatggccccgttgagagataccatgttta 19109537  T
Q  284 tgc 286  Q
    |||    
T  19109536 tgc 19109534  T

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Target: chr8 (Bit Score: 65; Significance: 4e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 292 - 396
Target Start/End: Original strand, 22192086 - 22192190
Alignment:
Q  292 ttatccaagacataaaagatttgcttcttcaaagtactgttacggtttgtaacactctcagataagggaaccaatgtgcggatttccttgcaaagctcga 391  Q
    ||||||| ||||| ||||||||||||| |||||||| |||||| |||||| ||||||||||| || ||||||||||||||||||| ||||| ||||||||    
T  22192086 ttatccatgacatgaaagatttgcttcatcaaagtattgttacagtttgtcacactctcagagaatggaaccaatgtgcggattttcttgccaagctcga 22192185  T
Q  392 agctt 396  Q
    |||||    
T  22192186 agctt 22192190  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 377
Target Start/End: Complemental strand, 18889156 - 18888934
Alignment:
Q  157 tgagctttcagctaactatcatggtctgatcatggccaaggattttggttatgcggagctagtttgttattctgact--cttgtttgcattaatcttatt 254  Q
    |||||||||  ||| |||||||||||||||||| |  ||| |||  ||||||| ||| |||| |||||| ||||| |  ||||||||||||||| | |||    
T  18889156 tgagctttctcctatctatcatggtctgatcatagataagaattggggttatgtggatctagcttgttactctgattatcttgtttgcattaatttgatt 18889057  T
Q  255 aatggtcccgtggagaaataccatgtttatgcagttcttatccaagacataaaagatttgcttcttcaaagtactgttacggtttgtaacactctcagat 354  Q
    |||||  || | ||||  |||||||| ||||  |  ||||| ||| |||||||| |||||||||||||||||| | | ||||||| | | || || |||     
T  18889056 aatggctccattgagaggtaccatgtctatgtggcccttattcaatacataaaaaatttgcttcttcaaagtaatatcacggtttctcatacgcttagag 18888957  T
Q  355 aagggaaccaatgtgcggatttc 377  Q
    | ||||||||| |||| ||||||    
T  18888956 atgggaaccaaagtgcagatttc 18888934  T

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Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 232 - 396
Target Start/End: Complemental strand, 37190460 - 37190293
Alignment:
Q  232 ctcttgtttgcattaatcttattaatg----gtcccgtggagaaataccatgtttatgcagttcttatccaagacataaaagatttgcttcttcaaagta 327  Q
    ||||||||||||| ||| |||||||||    ||| ||||||||||||| |||||||  |  | |||||||||||||||||| ||||||||||| ||||||    
T  37190460 ctcttgtttgcataaattttattaatgatcggtctcgtggagaaatactatgtttaatcgatccttatccaagacataaaa-atttgcttctttaaagta 37190362  T
Q  328 ctgttacggtttgtaacactctcagataagggaaccaatgtgcggatttccttgcaaagctcgaagctt 396  Q
    ||||||| |||||| ||||||||||| || ||||  ||| |  |||||| ||||||||||||| |||||    
T  37190361 ctgttacagtttgtcacactctcagagaacggaagtaatatatggattttcttgcaaagctcggagctt 37190293  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 37190579 - 37190509
Alignment:
Q  73 tggtggaattctgtgtaactatgtagggttgttcctatcggatttttcaggttttatttcagactcagatga 144  Q
    ||||||||||||| |||||||||||| ||||||  |||||  |||||||||||||||| || ||||| ||||    
T  37190579 tggtggaattctgcgtaactatgtagagttgtt-gtatcgagtttttcaggttttattccaaactcaaatga 37190509  T

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Target: chr2 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 39256530 - 39256440
Alignment:
Q  145 tatcatgttggatgagctttcagctaactatcatggtctgatcatggccaaggattttggttatgcggagctagtttgttattctgactct 235  Q
    ||||||||| | |||||||| | ||| |||||||||||||||||||||||  |||||  |||||||||||||||||||||||||| |||||    
T  39256530 tatcatgtttgttgagcttttaactatctatcatggtctgatcatggccatagatttgcgttatgcggagctagtttgttattctaactct 39256440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 263
Target Start/End: Complemental strand, 35061150 - 35061025
Alignment:
Q  140 gatgatatcatgttggatgagctttcagctaactatcatggtctgatcatggccaaggattttggttatgcggagctagtttgttattctga--ctcttg 237  Q
    ||||||||| || | | ||||||||| ||||  |||||||| || |||||||| || ||||| ||||||||  | || | ||| ||||||||  ||||||    
T  35061150 gatgatatcctgctaggtgagctttctgctatatatcatgggctaatcatggcaaaagatttgggttatgcataacttgcttgctattctgattctcttg 35061051  T
Q  238 tttgcattaatcttattaatggtccc 263  Q
     |||||| || |||||||||||||||    
T  35061050 cttgcatcaaccttattaatggtccc 35061025  T

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Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 311 - 428
Target Start/End: Original strand, 26554111 - 26554227
Alignment:
Q  311 tttgcttcttcaaagtactgttacggtttgtaacactctcagataagggaaccaatgtgcggatttccttgcaaagctcgaagcttgtttttgatactgg 410  Q
    ||||||||||||||||||| |||| |||||| ||| ||||||| ||||||| |||| ||| ||||||||| ||||||||  |||||  || ||||  |||    
T  26554111 tttgcttcttcaaagtacttttacagtttgtcacattctcagagaagggaatcaatatgcagatttccttccaaagctcagagctt-cttctgatgatgg 26554209  T
Q  411 ccttattatttatgagtc 428  Q
    ||||||||||||||||||    
T  26554210 ccttattatttatgagtc 26554227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 195 - 327
Target Start/End: Complemental strand, 36185736 - 36185604
Alignment:
Q  195 aggattttggttatgcggagctagtttgttattctga--ctcttgtttgcattaatcttattaatggtcccgtggagaaataccatgtttatgcagttct 292  Q
    ||||||| |||||| ||||| ||| |||||||| |||  |||||||||||||  ||||| ||||||| ||||| ||||  |||||||||||||| |||||    
T  36185736 aggatttgggttatacggagttagcttgttattatgattctcttgtttgcatatatcttcttaatggccccgttgaga--taccatgtttatgcggttct 36185639  T
Q  293 tatccaagacataaaagatttgcttcttcaaagta 327  Q
    | | ||| |||||||| | ||||||||||||||||    
T  36185638 tcttcaaaacataaaacaattgcttcttcaaagta 36185604  T

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