View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9305_low_3 (Length: 467)
Name: NF9305_low_3
Description: NF9305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9305_low_3 |
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| [»] scaffold0771 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 111 - 449
Target Start/End: Complemental strand, 54619120 - 54618780
Alignment:
| Q |
111 |
aggggaggtaagctattgtagtgaagctccctccgcccctgcccttgtgtttggccaaaacgtgtgttaggtccaattggttgttgtaggaggcgactgg |
210 |
Q |
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| T |
54619120 |
aggggaggtaagctattgcagtgaagctccctctgcccctgcccttgtgtttggtcaaaacgtgtgttaggtccaattggttgttgtaggaggcgactgg |
54619021 |
T |
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| Q |
211 |
ggtgcgagggctatcgctttcacggttcagcatgaaaattgttggaatatagatcataagtatagctactatgtagtcacgaatgtaggcacacttggcc |
310 |
Q |
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| T |
54619020 |
ggtgcgaggg---tcgctgtcacggttcagcatgaaaattgttggaatatagatcataagtatagctactatgtagtcacgaatgtaggcacacttggcc |
54618924 |
T |
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| Q |
311 |
ggtttgcgtaaacaaaaattgtgttcattgtattgcgatttatgattcttttattc-----nnnnnnnnnnnactaatgattcttttatcattttgttac |
405 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
54618923 |
ggtttgcgtaaacaaagattgtgttcattgtattgcgatttatgattcttttattcttttttctttttttttactaatgattcttttatcattttgttac |
54618824 |
T |
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| Q |
406 |
tagttgttcttacagattataannnnnnngtaaaccaaggtatc |
449 |
Q |
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| T |
54618823 |
tagttgttcttacagattataatttttttgtaaaccaaggtatc |
54618780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 54619629 - 54619520
Alignment:
| Q |
9 |
gggtggactaatgcagatgaaataagttgaatcatacaacaaactatattcaagtgattatgtttgagtatcactcataggcacaaaagaggggcaaggg |
108 |
Q |
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| T |
54619629 |
gggtggactaatgcagatgaaataagttgaatcatacaacagactatattcaagtgattatgtttgagtatcactcataggcacaaaagaggggcaaggg |
54619530 |
T |
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| Q |
109 |
gcaggggagg |
118 |
Q |
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| T |
54619529 |
gcaggggagg |
54619520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 13951061 - 13951107
Alignment:
| Q |
135 |
agctccctccgcccctgcccttgtgtttggccaaaacgtgtgttagg |
181 |
Q |
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| T |
13951061 |
agctccctccgcccctacccttgcgtttgacccaaacgtgtgttagg |
13951107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 3201 - 3247
Alignment:
| Q |
135 |
agctccctccgcccctgcccttgtgtttggccaaaacgtgtgttagg |
181 |
Q |
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| T |
3201 |
agctccctccgcccctacccttgcgtttgacccaaacgtgtgttagg |
3247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 6938287 - 6938345
Alignment:
| Q |
131 |
gtgaagctccctccgcccctgcccttgtgtttggccaaaacgtgtgttaggtccaattg |
189 |
Q |
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| T |
6938287 |
gtgaaactccctctgctcctgcccttgagtttggcccaaacgtgtgttagtcccaattg |
6938345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 39129296 - 39129349
Alignment:
| Q |
133 |
gaagctccctccgcccctgcccttgtgtttggccaaaacgtgtgttaggtccaa |
186 |
Q |
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| T |
39129296 |
gaagctccctccacccatgcccttgtgtttgggtcaaacgtgtgttaggcccaa |
39129349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 2697802 - 2697854
Alignment:
| Q |
127 |
tgtagtgaagctccctccgcccctgcccttgtgtttggccaaaacgtgtgtta |
179 |
Q |
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| T |
2697802 |
tgtagtgaagctccctccgtccctgaccttgcatttggcccaaacatgtgtta |
2697854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 29663225 - 29663197
Alignment:
| Q |
129 |
tagtgaagctccctccgcccctgcccttg |
157 |
Q |
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| T |
29663225 |
tagtgaagctccctccgcccctgcccttg |
29663197 |
T |
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