View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9305_low_7 (Length: 382)
Name: NF9305_low_7
Description: NF9305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9305_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 30343001 - 30343372
Alignment:
| Q |
1 |
aggtttgattgatgatgaaaagaaagaatacaaaaagcatcacaacgtcataaacaatttggtgaatgctttataattcaaggaattagacaagattgat |
100 |
Q |
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| T |
30343001 |
aggtttgattgataatgaaaagaaagaatacaaaaagcatcacaaagtcataaacaatttggtgaatgctttataattcaaggaattagacaagattgct |
30343100 |
T |
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| Q |
101 |
aataattctactcccaagagtatctttatgctctttgtgctacttatgaaggaaatcagcacataaaagaggtgaaagccaatcttttggtgcatcagta |
200 |
Q |
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| T |
30343101 |
gataattctactcccaagagtatctttatgctctttgtgctacttatgaaggaaatcagcacatgaaagaggtgaaagccaatcttctagtgcatcagta |
30343200 |
T |
|
| Q |
201 |
tgaaaccttcaagatgaaggaagatgaagatatttaaaccatgttctccaggtttcaagttc-------tggtatttggcatgcaggtacttgacaagag |
293 |
Q |
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| T |
30343201 |
tgaaaccttcaagatgaaggaagatgaagatatttaaaccatgttctccaggtttcaagttctggtatatggtatctggcatgcaagtacttgacaagag |
30343300 |
T |
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| Q |
294 |
ttattctactaaggatcatgtttacaagattcataaaagtttacaagtcaagtggatacccaaggttacaac |
365 |
Q |
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| T |
30343301 |
ttattctactaaggatcatgtttacaagattcatagaagtttacaagtcaagtggatacccaaggttacaac |
30343372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 363
Target Start/End: Original strand, 28560124 - 28560475
Alignment:
| Q |
14 |
gatgaaaagaaagaatacaaaaagcatcacaacgtcataaacaatttggtgaatgctttataattcaaggaattagacaagattgataataattctactc |
113 |
Q |
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| T |
28560124 |
gatgaaaagaaggaatacaaaaagcatcacaaagcgagaaacatttaggtgaatgttttggaattcaaggaattcaacaagattgttgataaatctactc |
28560223 |
T |
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| Q |
114 |
ccaagagtatcttt-atgctctttgtgctacttatgaaggaaatcagcacataaaagaggtgaaagccaatcttttggtgcatcagtatgaaaccttcaa |
212 |
Q |
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| T |
28560224 |
ctaagagtacgtttgatgctctctatgctacatatgaaggaaattagcaaatcaaggaggcaatggccaatttgctagtgccacggtatgaaaccctgaa |
28560323 |
T |
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| Q |
213 |
gatgaaggaagatgaagatatttaaa-ccatgttctccaggtttcaagttctggtatttggcatgcaggtacttgacaagagttattctactaaggatca |
311 |
Q |
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| T |
28560324 |
gataaaggaagatgaagatatcgaaaaccatgttctctaggtttcatgttttgatatctagaatgcatgtacttgacaaaagctattcttctaaggatca |
28560423 |
T |
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| Q |
312 |
tgtttacaagattcataaaagtttacaagtcaagtggatacccaaggttaca |
363 |
Q |
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| T |
28560424 |
tgttaacaagattctcataagtttactagtcaagtggaggcccaaggttaca |
28560475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 337
Target Start/End: Original strand, 23212803 - 23212877
Alignment:
| Q |
263 |
tggtatttggcatgcaggtacttgacaagagttattctactaaggatcatgtttacaagattcataaaagtttac |
337 |
Q |
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| T |
23212803 |
tggtatttggcatgcatgtacttgacaagagctacataactaaggatcatgttaacaagattcttaaaagtttac |
23212877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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