View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9306_high_29 (Length: 201)
Name: NF9306_high_29
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9306_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 6708391 - 6708532
Alignment:
| Q |
19 |
cgttacgatttcgttcgagatattggatcagggaatttcggcgttgctagactcatgagagataaacacaccaaagagcttgttgctgtcaaatatatcg |
118 |
Q |
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| T |
6708391 |
cgttacgatttcgttcgagatattggatcagggaatttcggcgttgctagactcatgagagataaacacaccaaagagcttgttgctgtcaaatatatcg |
6708490 |
T |
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| Q |
119 |
aacgcggagataaggtttcattccatcatcttttattatttg |
160 |
Q |
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| T |
6708491 |
aacgcggagataaggtttccttccatcatcttttattatttg |
6708532 |
T |
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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 34130302 - 34130245
Alignment:
| Q |
78 |
agataaacacaccaaagagcttgttgctgtcaaatatatcgaacgcggagataaggtt |
135 |
Q |
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| T |
34130302 |
agataaacaaaccaaagagcttgttgctgttaaatatatcgaacgtggtgataaggtt |
34130245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 12308724 - 12308803
Alignment:
| Q |
37 |
gatattggatcagggaatttcggcgttgctagactcatgagagataaacacaccaaagagcttgttgctgtcaaatatat |
116 |
Q |
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| T |
12308724 |
gatattggttctgggaattttggagtggctaggcttatgagagataaacacactaatcaacttgttgctgtcaagtatat |
12308803 |
T |
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