View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9306_high_4 (Length: 465)
Name: NF9306_high_4
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9306_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 23 - 457
Target Start/End: Complemental strand, 43301085 - 43300651
Alignment:
| Q |
23 |
ttcaggatatgataatttgattttgatcattaatggatgacatactaacaaatcttttgagattcacaagttatattagtgaccgattcttaaaattcat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43301085 |
ttcaggatatgataatttgattttgatcattaatggatgacatactaacaaatcttttgagactcacaagttatattagtgaccgattcttaaaattcat |
43300986 |
T |
|
| Q |
123 |
aggtgtgttcttgatttcatgatctctaccaagatatagatagctattagttatgttctattactttgaagtaatattttccatgatgtcaatgctgcac |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43300985 |
aggtgtgttcttgatttcatgatctctaccaagatatagatagctattagttatgttctattactttgaagtaatattttccatgatgtcaatgctgcac |
43300886 |
T |
|
| Q |
223 |
agaggatttggtacttagagatgcagttaggtatacagaaaattttggggccactccactgggcaattcatcagcacacaattcaaaaggttattacaca |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43300885 |
agaggatttggtacttagagatgcagttaggtatacagaaaattttggggccactccactgggcaattcatcagcacacaattcaaaacgttattacaca |
43300786 |
T |
|
| Q |
323 |
agaagcacgtctttgcaaccttctcaagtaggaagtgaaaaccatgaaatctatggaagaagagtcattaacaataatagtgaactgcttgtagatacca |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43300785 |
agaagcacgtctttgcaaccttctcaagtaggaagtgaaaaccatgaaatctatggaagaagagtcattaacaataatagtgaactgcttgtagatacca |
43300686 |
T |
|
| Q |
423 |
gatctattgctgtaaatgcaagttatgtctctgct |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
43300685 |
gatctattgctgtaaatgcaagttatgtctctgct |
43300651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University