View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9306_high_8 (Length: 385)
Name: NF9306_high_8
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9306_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 25 - 372
Target Start/End: Original strand, 8045845 - 8046189
Alignment:
| Q |
25 |
aatagaatatgaacttgtcgagtaagagttttaagatatatcggcaaattcgctagaaactttgagatatcgttttaatttttgacataattaagattta |
124 |
Q |
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| T |
8045845 |
aatagaatatgaacttgtcgaataagagttttaggatatattggcaaattcgctagaaactttgagatattgttttattttttgacataattaagattta |
8045944 |
T |
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| Q |
125 |
attttcggtatctggtccagatttttatagtattcaacaacatttctataatattctgcatgctccttgcatgaaggcctgtaaactgtttagctttgtg |
224 |
Q |
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| T |
8045945 |
attttcggtatctgatccagatttttatagtattcaacaacatatctataatattctgcatgctccttgcatgaaggcctgtaaactgtttagctttgtg |
8046044 |
T |
|
| Q |
225 |
tgatccatcgcaacaaaataaactagcaactgttaactgacagatctacaagaggtattataatgttattatatgatatattgaaagtgatattgtacca |
324 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8046045 |
tgatccatcgtaacaaaataaactagcaactgttaactgacacatctacatgaagtattataatg---ttatatgatatattgaaagtgatattgtacca |
8046141 |
T |
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| Q |
325 |
aacaatagtgagcataattttcagaaacaattatttgataccacgaaa |
372 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
8046142 |
aacaatagtgaacataattttcagaaacaattatttgataccatgaaa |
8046189 |
T |
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