View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9306_low_13 (Length: 438)
Name: NF9306_low_13
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9306_low_13 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 7 - 422
Target Start/End: Complemental strand, 21513352 - 21512936
Alignment:
| Q |
7 |
ttggagttatcaaaatttgtatcaaggaggagtgttgaaaaatgctacaaatttctagtagannnnnnnnnnnngttgagaataatgtaaaatacataat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21513352 |
ttggagttatcaaaatttgtatcaaggaggagtgttgaaaaatgctacaaatttctagtagatttttttttt--gttgagaataatgtaaaatacataag |
21513255 |
T |
|
| Q |
107 |
tgtagaacctttccccaagaag---tctctagagaacatataaccaacatgtcaagcgtataaaaaggctacttgctatccattttagagcaaaccacaa |
203 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21513254 |
tgtagaaactttccccaagaagaagtctctagagaacatataaccaacatgtcaagcctataaaaaggctacttactatccattttagagcaaaccacaa |
21513155 |
T |
|
| Q |
204 |
gctaattatcttctaacactacaaagtgtactgctccatttcaagttattataattcaagttctccacaattccatttttactacttcaactatttctac |
303 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21513154 |
gctaattatcttctaacactacaaagtgtactactccatttcaagttattataattcaagttctccacaattccatttttactacttcaactatttctac |
21513055 |
T |
|
| Q |
304 |
taaaataattcttactatccatttataaaatactaacaggatgcataagcattgtttcattttacaacatttggtatgagttnnnnnnnttgtatgatca |
403 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21513054 |
taaaataattcttactgtccatttataaaatactaacaggatgcataagcattgtttcattttacaacatttggtatgagttaaaaaaattgtatgatca |
21512955 |
T |
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| Q |
404 |
aaatttcacatgatcctgt |
422 |
Q |
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||||||||||||||||||| |
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| T |
21512954 |
aaatttcacatgatcctgt |
21512936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 91 - 327
Target Start/End: Complemental strand, 12842268 - 12842030
Alignment:
| Q |
91 |
atgtaaaatacataattgtagaacctttccccaagaagtctctagagaacatataaccaacatgtcaagcgtataaaaaggctacttgctatccatttta |
190 |
Q |
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||||||||||||| | |||| |||||| || |||| |||| ||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
12842268 |
atgtaaaatacatcagtgtataaccttcttcctagaactctccagagaacatgtaaccaacatgtcaagtccataaataggctacttgctatccatttta |
12842169 |
T |
|
| Q |
191 |
gagcaaaccacaagctaattatcttctaacactacaaagtgtactgctccatttcaagttattataatt-caagttctccac-aattccatttttactac |
288 |
Q |
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||| || ||||||||| |||||||||||| ||||||| | || ||| ||||||||| ||||||| |||||| ||||| ||||||||||| ||||| |
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| T |
12842168 |
gagtaaggcacaagctagcaatcttctaacacaacaaagtatgctactcttgttcaagttaatataattccaagttatccacaaattccattttcactac |
12842069 |
T |
|
| Q |
289 |
ttcaactatttctactaaaataattcttactatccattt |
327 |
Q |
| |
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||||||||||| ||||||| |||| |||||||||||||| |
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| T |
12842068 |
ttcaactatttttactaaactaatccttactatccattt |
12842030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 102 - 342
Target Start/End: Original strand, 8989830 - 8990074
Alignment:
| Q |
102 |
ataattgtagaacctttccccaagaagtctctagagaacatataaccaacatgtcaagcgtataaaaaggctacttgctatccattttagagcaaaccac |
201 |
Q |
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|||| ||||||| ||| ||| |||| | ||||||||||| |||||||||||||| |||||||||| ||||||||||| ||||||||||| || |||| |
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| T |
8989830 |
ataagtgtagaaacttctccctagaactatctagagaacaaataaccaacatgtctagcgtataaataggctacttgccatccattttaggccatgccac |
8989929 |
T |
|
| Q |
202 |
aagctaattatcttc----taacactacaaagtgtactgctccatttcaagttattataattcaagttctccac-aattccatttttactacttcaacta |
296 |
Q |
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||||||| ||||||| ||||||||||||||||||| ||| || |||||| ||||||||||| ||||||| ||||| ||||| ||||||||||||| |
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| T |
8989930 |
aagctaaatatcttctaattaacactacaaagtgtactactcttatttaagttaatataattcaag-tctccacaaattctattttcactacttcaacta |
8990028 |
T |
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| Q |
297 |
tttctactaaaataattcttactatccatttataaaatactaacag |
342 |
Q |
| |
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||||||||||| |||| |||||||||||||| ||||||| |||||| |
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| T |
8990029 |
tttctactaaactaatccttactatccatttctaaaatagtaacag |
8990074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 8989466 - 8989498
Alignment:
| Q |
32 |
ggaggagtgttgaaaaatgctacaaatttctag |
64 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
8989466 |
ggaggagtgttgaaatatgctacaaatttctag |
8989498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 3147 - 3199
Alignment:
| Q |
181 |
atccattttagagcaaaccacaagctaattatcttctaacactacaaagtgta |
233 |
Q |
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|||||||||||||||| |||||||||| |||||| || |||||||||||||| |
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| T |
3147 |
atccattttagagcaagccacaagctagctatcttataccactacaaagtgta |
3199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 4693 - 4745
Alignment:
| Q |
181 |
atccattttagagcaaaccacaagctaattatcttctaacactacaaagtgta |
233 |
Q |
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|||||||||||||||| |||||||||| |||||| || |||||||||||||| |
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| T |
4693 |
atccattttagagcaagccacaagctagctatcttataccactacaaagtgta |
4745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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