View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9306_low_14 (Length: 417)

Name: NF9306_low_14
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9306_low_14
NF9306_low_14
[»] chr6 (11 HSPs)
chr6 (22-399)||(32449969-32450348)
chr6 (246-399)||(10751312-10751464)
chr6 (223-399)||(26182392-26182566)
chr6 (276-399)||(23260366-23260489)
chr6 (312-399)||(34636555-34636641)
chr6 (22-173)||(23260523-23260663)
chr6 (340-404)||(24163325-24163390)
chr6 (30-77)||(10751590-10751637)
chr6 (303-378)||(20555634-20555709)
chr6 (22-77)||(25005309-25005364)
chr6 (96-148)||(25005374-25005426)
[»] chr1 (16 HSPs)
chr1 (22-399)||(35761756-35762135)
chr1 (199-399)||(19198466-19198669)
chr1 (100-315)||(16074936-16075150)
chr1 (246-399)||(37666930-37667082)
chr1 (340-397)||(26317615-26317672)
chr1 (22-77)||(37667208-37667263)
chr1 (298-404)||(16075096-16075201)
chr1 (22-74)||(9537389-9537441)
chr1 (305-379)||(28561778-28561852)
chr1 (289-350)||(6836247-6836308)
chr1 (335-399)||(9537143-9537206)
chr1 (30-66)||(16074874-16074910)
chr1 (335-399)||(43407119-43407182)
chr1 (330-399)||(25921874-25921942)
chr1 (335-399)||(338499-338562)
chr1 (335-399)||(8421953-8422016)
[»] chr7 (13 HSPs)
chr7 (36-399)||(21491199-21491568)
chr7 (246-399)||(22077977-22078130)
chr7 (96-399)||(18367033-18367348)
chr7 (319-399)||(11036098-11036178)
chr7 (312-399)||(15873727-15873813)
chr7 (22-77)||(22077796-22077851)
chr7 (319-357)||(9993666-9993704)
chr7 (22-67)||(48576495-48576540)
chr7 (330-407)||(48653541-48653617)
chr7 (335-399)||(10288543-10288606)
chr7 (335-399)||(40106201-40106264)
chr7 (36-81)||(18367356-18367401)
chr7 (342-399)||(49170055-49170111)
[»] chr4 (6 HSPs)
chr4 (96-399)||(49499242-49499557)
chr4 (22-77)||(28969213-28969268)
chr4 (289-350)||(69629-69690)
chr4 (297-399)||(2761812-2761913)
chr4 (331-399)||(40459338-40459405)
chr4 (37-77)||(49499191-49499231)
[»] chr3 (11 HSPs)
chr3 (96-399)||(16975460-16975774)
chr3 (225-399)||(11937581-11937756)
chr3 (246-399)||(5004472-5004624)
chr3 (289-399)||(9104525-9104635)
chr3 (22-77)||(5004750-5004805)
chr3 (312-399)||(46404353-46404439)
chr3 (294-399)||(8731155-8731260)
chr3 (294-399)||(9083042-9083147)
chr3 (96-145)||(11967862-11967909)
chr3 (289-350)||(17542500-17542561)
chr3 (335-399)||(7336446-7336509)
[»] chr5 (7 HSPs)
chr5 (261-399)||(4557709-4557850)
chr5 (312-399)||(537188-537274)
chr5 (23-173)||(4557914-4558056)
chr5 (262-331)||(6309116-6309184)
chr5 (330-399)||(42861801-42861869)
chr5 (335-399)||(30910190-30910252)
chr5 (335-399)||(40691266-40691329)
[»] chr8 (4 HSPs)
chr8 (319-399)||(40841229-40841309)
chr8 (319-357)||(35840682-35840720)
chr8 (335-379)||(35840736-35840780)
chr8 (335-399)||(44436513-44436576)
[»] scaffold0413 (2 HSPs)
scaffold0413 (246-357)||(9170-9281)
scaffold0413 (22-68)||(9005-9051)
[»] chr2 (9 HSPs)
chr2 (299-399)||(28266864-28266963)
chr2 (299-399)||(12774144-12774243)
chr2 (292-380)||(29270991-29271079)
chr2 (335-399)||(18292446-18292509)
chr2 (335-399)||(40729179-40729242)
chr2 (330-407)||(35670496-35670572)
chr2 (335-399)||(41340005-41340068)
chr2 (319-350)||(44788879-44788910)
chr2 (335-399)||(40447872-40447935)
[»] scaffold1838 (1 HSPs)
scaffold1838 (22-77)||(339-394)


Alignment Details
Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 22 - 399
Target Start/End: Complemental strand, 32450348 - 32449969
Alignment:
Q  22 gatgtgtgtatgataatgttatgtagaatgacatttattttatttttctatgcatagatgnnnnnnnnnnnnnngtggtattgggaaagaagtgttagat 121  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||              |||||||||  ||||||||||||||     
T  32450348 gatgtgtgtatgataatgttatgtggaatgacatttattttatttttctatgcatatatgttttt---------gtggtattgttaaagaagtgttagac 32450258  T
Q  122 tttgttgataaacaaaagaaatgaaaaataaagatatatgagttttatgaaaggattgactttttgttcaagtggacaatgatgtgttaatctctgactg 221  Q
    ||||||||||||| ||| ||||||||| || ||| |||||||||||||||||  |||   |||| ||||| ||| |  ||||||||||||| ||||||||    
T  32450257 tttgttgataaactaaataaatgaaaa-tatagaaatatgagttttatgaaaatatttcattttggttcatgtgcatgatgatgtgttaatatctgactg 32450159  T
Q  222 ggtttgccta------------agtggagggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtgg 309  Q
      ||||||||            ||| | |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||||||    
T  32450158 tatttgcctatgagtttgtcttagtcgtgggtattttatttgactatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtgg 32450059  T
Q  310 caggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  32450058 cgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtgg 32449969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 246 - 399
Target Start/End: Complemental strand, 10751464 - 10751312
Alignment:
Q  246 tatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtg 345  Q
    |||||| |||||  |||||||||||||||||||||||||||| |||| |||| |||||||||||| |||||||||||||||||||| |||||||| ||||    
T  10751464 tatttgtctatgagtttgccttagtggctggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtg 10751365  T
Q  346 gcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    ||||| |||||||| ||||||||||||| |||| | ||||||||||||||||||    
T  10751364 gcgggttttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtgg 10751312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 223 - 399
Target Start/End: Complemental strand, 26182566 - 26182392
Alignment:
Q  223 gtttgcctaagtggagggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatca 322  Q
    |||||||| ||||| ||||||||||||||||||| | |||||||  ||||| ||||||||||||| ||||  ||  |||||||||||| |||||| ||||    
T  26182566 gtttgccttagtggcgggtattttatttgactatacgtttgcct--gtggcgggttaataatatatttcttggtcgtgccttagtggcgggataatatca 26182469  T
Q  323 tattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||||||||||||||   ||||| ||||||||||||||||||||||||| |||||||   |||||||||||||||    
T  26182468 tattgcattgttgtgccactgtggcaggatttagtcttcattttcatgatcatgcattaatgtatgcatctgtgtgg 26182392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 276 - 399
Target Start/End: Complemental strand, 23260489 - 23260366
Alignment:
Q  276 gttaataatatacttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggc-gggatttagtcttcattttcatgatct 374  Q
    |||||||||||| || | |||| ||||||||||||||||||||||||| ||||||| ||||||||||||| | ||| |||||||| |||||||||||||     
T  23260489 gttaataatatatttttttgtggtgccttagtggcaggataacatcatgttgcattattgtgcctaagtgacggggttttagtctgcattttcatgatca 23260390  T
Q  375 tgcattagcatatgcatctgtgtgg 399  Q
    |||| | ||||||||||||||||||    
T  23260389 tgca-tggcatatgcatctgtgtgg 23260366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 312 - 399
Target Start/End: Original strand, 34636555 - 34636641
Alignment:
Q  312 ggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||||||||||||||||| |||||||| ||||||||| |||||| | |||||||||| || |||| | ||||||||||||||||||    
T  34636555 ggataacatcatattgcattattgtgccttagtggcgggttttagtgtgcattttcatgttcgtgca-tggcatatgcatctgtgtgg 34636641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 173
Target Start/End: Complemental strand, 23260663 - 23260523
Alignment:
Q  22 gatgtgtgtatgataatgttatgtagaatgacatttattttatttttctatgcatagatgnnnnnnnnnnnnnngtggtattgggaaagaagtgttagat 121  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||| |||| |||              |||||||||  ||||||||||||||     
T  23260663 gatgtttgtatgataatgttatgtggaatgacatttattttatttttctattcatatatg---------tttttgtggtattgttaaagaagtgttaga- 23260574  T
Q  122 tttgttgataaacaaaagaaatgaaaaataaagatatatgagttttatgaaa 173  Q
    |||| |||||||| ||| ||||| |||||| ||| |||||||||||||||||    
T  23260573 tttgctgataaactaaataaatg-aaaatatagaaatatgagttttatgaaa 23260523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 404
Target Start/End: Original strand, 24163325 - 24163390
Alignment:
Q  340 taagtggcgggatttagtcttca-ttttcatgatcttgcattagcatatgcatctgtgtggggtct 404  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||||||| |||||||||| ||||    
T  24163325 taagtggcgggatttagtcttcatttttcatgattatgcattagcatatgtatctgtgtggtgtct 24163390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 10751637 - 10751590
Alignment:
Q  30 tatgataatgttatgtagaatgacatttattttatttttctatgcata 77  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||    
T  10751637 tatgataatgttatgtggaatgacatttattttatttttctattcata 10751590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 378
Target Start/End: Original strand, 20555634 - 20555709
Alignment:
Q  303 ttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgca 378  Q
    |||||||| |||||| ||||||||||||||||||| ||| |||| |||||||||| |||||| |||| ||| ||||    
T  20555634 ttagtggcgggataatatcatattgcattgttgtgtctatgtggtgggatttagttttcattatcattatcatgca 20555709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 25005309 - 25005364
Alignment:
Q  22 gatgtgtgtatgataatgttatgtagaatgacatttattttatttttctatgcata 77  Q
    ||||| ||||||||||| |||||| |||||||||||||||||||||||||| ||||    
T  25005309 gatgtctgtatgataattttatgtggaatgacatttattttatttttctattcata 25005364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 25005374 - 25005426
Alignment:
Q  96 gtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaaa 148  Q
    |||||||||  |||||||||||||| |||| |||||||| ||| |||||||||    
T  25005374 gtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaa 25005426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 22 - 399
Target Start/End: Complemental strand, 35762135 - 35761756
Alignment:
Q  22 gatgtgtgtatgataatgttatgtagaatgacatttattttatttttctatgcatagatgnnnnnnnnnnnnnngtggtattgggaaagaagtgttagat 121  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||              |||||||||  || |||||||||||     
T  35762135 gatgtgtgtatgataatgttatgtggaatgacatttattttatttttctatgcatatatgttttt---------gtggtattgttaatgaagtgttagac 35762045  T
Q  122 tttgttgataaacaaaagaaatgaaaaataaagatatatgagttttatgaaaggattgactttttgttcaagtggacaatgatgtgttaatctctgactg 221  Q
    ||||| ||||||| ||| ||||||||| || ||| ||||| |||||||||||  |||   |||| ||||| |||||  ||||||||||||| | ||||||    
T  35762044 tttgtagataaactaaataaatgaaaa-tatagaaatatgtgttttatgaaaatatttcattttggttcatgtggatgatgatgtgttaatatttgactg 35761946  T
Q  222 ggtttgccta------------agtggagggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtgg 309  Q
      ||||||||            |||||  ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||||||    
T  35761945 tatttgcctatgagtttgccttagtggcaggtattttatttgactatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtgg 35761846  T
Q  310 caggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  35761845 caggataacatcatactgcattgttgtgcctaagtggcggaatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtgg 35761756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 199 - 399
Target Start/End: Complemental strand, 19198669 - 19198466
Alignment:
Q  199 aatgatgtgttaatctctgactgggtttgcctaagtggagggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtgt 298  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||| || | ||||||||||||| |||| ||||     
T  19198669 aatgatgtgttaatctctgactgtgtttgcctgagtggcgggtattttatttgactatgcatttgccttaatgacgggttaataatatatttctttgtgg 19198570  T
Q  299 tgccttagtggcaggataaca---tcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgt 395  Q
    |||||||||||| ||||||||   ||||||||||||||||| |||||||||||| ||||| |||||||||| |||||| ||||||| |||||||||||||    
T  19198569 tgccttagtggcgggataacatcatcatattgcattgttgtacctaagtggcggaatttaatcttcatttttatgatcatgcattaacatatgcatctgt 19198470  T
Q  396 gtgg 399  Q
    ||||    
T  19198469 gtgg 19198466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 100 - 315
Target Start/End: Original strand, 16074936 - 16075150
Alignment:
Q  100 tattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaaaataaagatatatgagttttatgaaaggattgactttttgttcaagtggaca 199  Q
    ||||||||||||||||||||||||| || |||||| ||||||||||||||||   | || ||||||| ||||||  ||||||||||  |||| ||||| |    
T  16074936 tattgggaaagaagtgttagattttttttataaactaaagaaatgaaaaatatgaaaatgtgagtttcatgaaaatattgacttttgattcatgtggata 16075035  T
Q  200 atgatgtgttaatctctgactgggtttgcctaagtggagggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtgtt 299  Q
    ||||||||||||||||| |||| ||||| |||||||| ||||||||||||||| |||||| |||||||| |||| ||||||||  ||| | || |||| |    
T  16075036 atgatgtgttaatctcttactgtgtttgtctaagtggcgggtattttatttgattatgca-ttgccttaatggcgggttaatatcatattactttgtggt 16075134  T
Q  300 gccttagtggcaggat 315  Q
    |||| |||||| ||||    
T  16075135 gcctgagtggcgggat 16075150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 246 - 399
Target Start/End: Complemental strand, 37667082 - 37666930
Alignment:
Q  246 tatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtg 345  Q
    |||||| |||||  |||||||||||| | ||||||||||||| |||| |||| |||||||||||| |||||||||||||||||||| |||||||| ||||    
T  37667082 tatttgtctatgagtttgccttagtgacgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtg 37666983  T
Q  346 gcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    ||||  |||||||| ||||||||||||| |||| |  |||||||||||||||||    
T  37666982 gcggattttagtctgcattttcatgatcatgca-tgtcatatgcatctgtgtgg 37666930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 397
Target Start/End: Original strand, 26317615 - 26317672
Alignment:
Q  340 taagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgt 397  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||| |||| ||||    
T  26317615 taagtggcggaatttagtcttcattttcatgatcatgcattagcatatacatcagtgt 26317672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 37667263 - 37667208
Alignment:
Q  22 gatgtgtgtatgataatgttatgtagaatgacatttattttatttttctatgcata 77  Q
    ||||| |||||||||||||||||| ||||||| |||||||||||||||||| ||||    
T  37667263 gatgtctgtatgataatgttatgtggaatgacttttattttatttttctattcata 37667208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 404
Target Start/End: Original strand, 16075096 - 16075201
Alignment:
Q  298 ttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgt 397  Q
    |||||||| |||| || ||| |||||||| | |||| |||||| |||||||||||||||  | ||||||||||||| |||| | ||| ||||||||||||    
T  16075096 ttgccttaatggcgggttaatatcatattactttgtggtgcctgagtggcgggatttaggatgcattttcatgatcatgca-tggcaaatgcatctgtgt 16075194  T
Q  398 ggggtct 404  Q
    || ||||    
T  16075195 ggtgtct 16075201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 9537441 - 9537389
Alignment:
Q  22 gatgtgtgtatgataatgttatgtagaatgacatttattttatttttctatgc 74  Q
    ||||| |||||||||||||||||||||||||||||||||| || || ||||||    
T  9537441 gatgtttgtatgataatgttatgtagaatgacatttatttcatgttgctatgc 9537389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 379
Target Start/End: Original strand, 28561778 - 28561852
Alignment:
Q  305 agtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcat 379  Q
    ||||||||| ||| |||||||| | |||| |||  |||||||||||||||| | ||||||||||||||| |||||    
T  28561778 agtggcaggttaatatcatatttctttgtggtgtttaagtggcgggatttaattttcattttcatgatcatgcat 28561852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 6836247 - 6836308
Alignment:
Q  289 ttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcggg 350  Q
    |||| |||| |||||| ||||| ||  || ||||||||||||||||||||||||||||||||    
T  6836247 ttctatgtggtgcctttgtggcgggtaaatatcatattgcattgttgtgcctaagtggcggg 6836308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 9537206 - 9537143
Alignment:
Q  335 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||| ||||||||| |||||||| ||||||||||||| |||| | |||||||||| |||||||    
T  9537206 gtgccttagtggcgggttttagtctacattttcatgatcatgca-tggcatatgcatttgtgtgg 9537143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 16074874 - 16074910
Alignment:
Q  30 tatgataatgttatgtagaatgacatttattttattt 66  Q
    ||||||||||| |||||||||||||||||||||||||    
T  16074874 tatgataatgtaatgtagaatgacatttattttattt 16074910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 43407182 - 43407119
Alignment:
Q  335 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||| ||||||||| |||||| | ||||||||||||| |||| | ||||||||||||||||||    
T  43407182 gtgccttagtggcgggttttagtttgcattttcatgatcatgca-tggcatatgcatctgtgtgg 43407119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 399
Target Start/End: Original strand, 25921874 - 25921942
Alignment:
Q  330 ttgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||| ||||||||||| |||||||| || | ||||||||||||| | ||| | |||||||||||||||||    
T  25921874 ttgtggtgcctaagtgacgggattttgtttacattttcatgatcatacatga-catatgcatctgtgtgg 25921942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 399
Target Start/End: Original strand, 338499 - 338562
Alignment:
Q  335 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||| ||||||||| |||||| | ||||||||||||| |||| |  |||||||||||||||||    
T  338499 gtgccttagtggcgggttttagtttgcattttcatgatcatgca-tgtcatatgcatctgtgtgg 338562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 399
Target Start/End: Original strand, 8421953 - 8422016
Alignment:
Q  335 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||| || |||||| |||||||| ||||||||||||| |||| | |||||||||||| |||||    
T  8421953 gtgccttagcggcgggttttagtctgcattttcatgatcatgca-tggcatatgcatctatgtgg 8422016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 8e-74; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 36 - 399
Target Start/End: Complemental strand, 21491568 - 21491199
Alignment:
Q  36 aatgttatgtagaatgacatttattttatttttctatgcatagatgnnnnnnnnnnnnnngtggtattgggaaagaagtgttagattttgttgataaaca 135  Q
    ||||||||||||||||||||||||||||||||  |||||||| |||              |||||||||||||||||||||| ||||||||||||||||     
T  21491568 aatgttatgtagaatgacatttattttattttgatatgcatatatgtttttttt------gtggtattgggaaagaagtgttggattttgttgataaact 21491475  T
Q  136 aaagaaatgaaaaataaagatatatgagttttatgaaaggattgactttttgttcaagtggacaatgatgtgttaatctctgactgggtttgccta---- 231  Q
    ||||||||||||| || ||  |||||||||||||||||  |||   |||| ||||| |||||  ||||||||||||| ||| | || |||||| ||        
T  21491474 aaagaaatgaaaa-tatagtaatatgagttttatgaaaatatttcattttggttcatgtggatgatgatgtgttaatatcttattgtgtttgcttatgag 21491376  T
Q  232 --------agtggagggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatcat 323  Q
            ||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| |||| |||| |||||||||||| ||| || |||||    
T  21491375 gttgccttagtggcgggtattttatttgactatgcatttgccttagtggtgggttaataatatatttctgtgtggtgccttagtggcgggagaatatcat 21491276  T
Q  324 attgcattgttgtgcctaagtggcgggatttagtcttcatt-ttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  21491275 attgcattgttgtgcctaagtggctggatttagtcttcattgttcatgatcatgcattagcatatgcatctgtgtgg 21491199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 246 - 399
Target Start/End: Original strand, 22077977 - 22078130
Alignment:
Q  246 tatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtg 345  Q
    |||||||||||||||||||||||||||| |||||||||||||  ||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  22077977 tatttgactatgcatttgccttagtggcgggttaataatatatctctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtg 22078076  T
Q  346 gcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22078077 gcgggatttagtcttcattttcatgatcatgcattagcatatgcatctgtgtgg 22078130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 96 - 399
Target Start/End: Complemental strand, 18367348 - 18367033
Alignment:
Q  96 gtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaaaataaagatatatgagttttatgaaaggattgactttttgttcaagtg 195  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| || ||| ||||||| ||||| |||  |||   |||| |||||  ||    
T  18367348 gtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaa-tatagaaatatgagatttataaaaatatttcattttggttcatatg 18367250  T
Q  196 gacaatgatgtgttaatctctgactgggtttg------------cctaagtggagggtattttatttgactatgcatttgccttagtggctggttaataa 283  Q
    ||  |||||||||||||  |||| || |||||            ||| ||||| |||||||||| ||||||||||||||| ||||| ||| |||||||||    
T  18367249 gatgatgatgtgttaatacctgattgtgtttggttatgaggttgccttagtggcgggtattttaattgactatgcatttgtcttaggggcgggttaataa 18367150  T
Q  284 tatacttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcatt-ttcatgatcttgcattag 382  Q
    || | |||| |||| ||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||| |||||||| |||||||||  |||||||    
T  18367149 tagatttctgtgtggtgccttagtggcaggataatatcatattgcattgttgtccctaagtggctggatttaatcttcattgttcatgatcacgcattag 18367050  T
Q  383 catatgcatctgtgtgg 399  Q
    |||||| || |||||||    
T  18367049 catatgtatttgtgtgg 18367033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 319 - 399
Target Start/End: Complemental strand, 11036178 - 11036098
Alignment:
Q  319 atcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  11036178 atcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcatgcattagcatatgcatctctgtgg 11036098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 312 - 399
Target Start/End: Complemental strand, 15873813 - 15873727
Alignment:
Q  312 ggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||||||||||||||||| |||||||| ||||||||| |||||| | |||||||||| || |||| | ||||||||||||||||||    
T  15873813 ggataacatcatattgcattattgtgccttagtggcgggttttagtgtgcattttcatgttcgtgca-tggcatatgcatctgtgtgg 15873727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 22077796 - 22077851
Alignment:
Q  22 gatgtgtgtatgataatgttatgtagaatgacatttattttatttttctatgcata 77  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| |||||||||    
T  22077796 gatgtgtgtatgataatgttatgtagaatgacatttgctttattttcctatgcata 22077851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 357
Target Start/End: Original strand, 9993666 - 9993704
Alignment:
Q  319 atcatattgcattgttgtgcctaagtggcgggatttagt 357  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9993666 atcatattgcattgttgtgcctaagtggcgggatttagt 9993704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 48576495 - 48576540
Alignment:
Q  22 gatgtgtgtatgataatgttatgtagaatgacatttattttatttt 67  Q
    ||||||||||||||||||| ||| ||||||||||||||| ||||||    
T  48576495 gatgtgtgtatgataatgtgatgcagaatgacatttattctatttt 48576540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 407
Target Start/End: Complemental strand, 48653617 - 48653541
Alignment:
Q  330 ttgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggggtctgtg 407  Q
    |||| ||||||||||||||||||| |   | ||||||||||||| ||||| | ||||||||||||||||| |||||||    
T  48653617 ttgtggtgcctaagtggcgggattcatgatccattttcatgatcatgcataa-catatgcatctgtgtggtgtctgtg 48653541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 10288606 - 10288543
Alignment:
Q  335 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||| ||||||||| |||||| | ||||||||||||| |||| | ||||||||||||||||||    
T  10288606 gtgccttagtggcgggttttagtttgcattttcatgatcatgca-tggcatatgcatctgtgtgg 10288543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 399
Target Start/End: Original strand, 40106201 - 40106264
Alignment:
Q  335 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||| ||||||||  |||||||| ||||||||||||| |||| | ||||||||||||||||||    
T  40106201 gtgccttagtggcggattttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtgg 40106264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 18367401 - 18367356
Alignment:
Q  36 aatgttatgtagaatgacatttattttatttttctatgcatagatg 81  Q
    ||||||| ||||||||||||||||||||||||  |||||||| |||    
T  18367401 aatgttacgtagaatgacatttattttattttgatatgcatatatg 18367356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 399
Target Start/End: Complemental strand, 49170111 - 49170055
Alignment:
Q  342 agtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    ||||||||  |||||||| ||||||||||||| |||| | ||||||||||||||||||    
T  49170111 agtggcggattttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtgg 49170055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 96 - 399
Target Start/End: Original strand, 49499242 - 49499557
Alignment:
Q  96 gtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaaaataaagatatatgagttttatgaaaggattgactttttgttcaagtg 195  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| || ||| |||||||||||||||||  |||   |||| ||||| |||    
T  49499242 gtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaa-tatagaaatatgagttttatgaaaatatttcattttggttcatgtg 49499340  T
Q  196 gacaatgatgtgttaatctctgactgggtttgccta------------agtggagggtattttatttgactatgcatttgccttagtggctggttaataa 283  Q
    ||  |||||||||||||  || | || |||||| ||            ||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  49499341 gatgatgatgtgttaatacctaattgtgtttgcttatgaggttgccttagtggcgggtattttatttgactatgcatttgccttagtggcgggttaataa 49499440  T
Q  284 tatacttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcatt-ttcatgatcttgcattag 382  Q
    |||| |||| |||| |||||||||||| |||| | ||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  49499441 tatatttctgtgtggtgccttagtggcgggatgatatcatattgcatttttgtgcctaagtggctggatttagtcttcattgttcatgatcatgcattag 49499540  T
Q  383 catatgcatctgtgtgg 399  Q
    |||||||||||||||||    
T  49499541 catatgcatctgtgtgg 49499557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 28969268 - 28969213
Alignment:
Q  22 gatgtgtgtatgataatgttatgtagaatgacatttattttatttttctatgcata 77  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  28969268 gatgtgtgtatgataattttatgtagaatgacatttattttattttgctatgcata 28969213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 69629 - 69690
Alignment:
Q  289 ttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcggg 350  Q
    |||| |||| |||||| ||||| ||  || ||||||||||||||||||||||||||||||||    
T  69629 ttctgtgtggtgcctttgtggcgggtaaatatcatattgcattgttgtgcctaagtggcggg 69690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 399
Target Start/End: Complemental strand, 2761913 - 2761812
Alignment:
Q  297 gttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtg 396  Q
    |||||||||||||  || | | ||||||||   |||| |||| ||||||| |||||||||  ||||||||||||||| |||| | |||||||||| ||||    
T  2761913 gttgccttagtggtgggttgatatcatattattttgtggtgcttaagtggtgggatttaggattcattttcatgatcatgca-tggcatatgcatttgtg 2761815  T
Q  397 tgg 399  Q
    |||    
T  2761814 tgg 2761812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 399
Target Start/End: Original strand, 40459338 - 40459405
Alignment:
Q  331 tgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||||||| ||||||||| |||||  | ||||||||||||| |||| |  |||||||||||||||||    
T  40459338 tgttgtgccttagtggcgggttttaggttgcattttcatgatcatgca-tgtcatatgcatctgtgtgg 40459405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 49499191 - 49499231
Alignment:
Q  37 atgttatgtagaatgacatttattttatttttctatgcata 77  Q
    |||||| ||||||||||||||||||||||||  ||||||||    
T  49499191 atgttacgtagaatgacatttattttattttgatatgcata 49499231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 96 - 399
Target Start/End: Original strand, 16975460 - 16975774
Alignment:
Q  96 gtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaaaataaagatatatgagttttatgaaaggattgactttttgttcaagtg 195  Q
    |||||||||  |||||||||||||| |||| |||||||| ||| ||||||||| || ||| |||||||||||||||||  |||    ||| ||||| |||    
T  16975460 gtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaa-tatagaaatatgagttttatgaaaatatttcagtttggttcatgtg 16975558  T
Q  196 gacaatgatgtgttaatctctgact------------gggtttgcctaagtggagggtattttatttgactatgcatttgccttagtggctggttaataa 283  Q
    ||  ||||||||||||| | |||||            | |||||||| ||||| ||||||||||||||| ||||| |||||||||||||| |||||||||    
T  16975559 gatgatgatgtgttaatatgtgactatatttgcctatgagtttgccttagtggcgggtattttatttgattatgcgtttgccttagtggcgggttaataa 16975658  T
Q  284 tatacttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggc-gggatttagtcttcattttcatgatcttgcattag 382  Q
    |||| |||| |||| |||||||||||| |||||||||||||||||||| ||||||||||||||| ||| |||||||| ||||||||||||| | || | |    
T  16975659 tatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtctgcattttcatgatcatcca-tgg 16975757  T
Q  383 catatgcatctgtgtgg 399  Q
    |||||||||||||||||    
T  16975758 catatgcatctgtgtgg 16975774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 225 - 399
Target Start/End: Complemental strand, 11937756 - 11937581
Alignment:
Q  225 ttgcctaagtggagggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatcata 324  Q
    |||||| |||||  ||||||||||||||||||||||||||||||||||| |||| |||||||| |||| |||| |||||||||||| |||||| ||||||    
T  11937756 ttgccttagtggcaggtattttatttgactatgcatttgccttagtggcaggttcataatatatttctgtgtggtgccttagtggcgggataatatcata 11937657  T
Q  325 ttgcattgttgtgcctaagtggcgggatttagtcttcatt-ttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    ||||||||||||||||||||||  ||||||||| |||||| || |||||| ||||||||||||||||| |||||||    
T  11937656 ttgcattgttgtgcctaagtggttggatttagttttcattgtttatgatcatgcattagcatatgcatttgtgtgg 11937581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 246 - 399
Target Start/End: Complemental strand, 5004624 - 5004472
Alignment:
Q  246 tatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtg 345  Q
    |||||| |||||  |||||||||||||| ||||||||||||| |||| |||| |||||||||||| |||||||||||||||||||| |||||||| ||||    
T  5004624 tatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtg 5004525  T
Q  346 gcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    ||||| |||||||| ||||||||||||| |||| | ||||||||||||||||||    
T  5004524 gcgggttttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtgg 5004472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 289 - 399
Target Start/End: Original strand, 9104525 - 9104635
Alignment:
Q  289 ttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatg 388  Q
    |||| |||| |||||| ||||||||  || |||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  9104525 ttctgtgtggtgcctttgtggcaggtaaatatcatattgctttgttgtgcctaagtggcgtgatttagtcttcattttcatgatcatgcattagcatatg 9104624  T
Q  389 catctgtgtgg 399  Q
    |||||||||||    
T  9104625 catctgtgtgg 9104635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 5004805 - 5004750
Alignment:
Q  22 gatgtgtgtatgataatgttatgtagaatgacatttattttatttttctatgcata 77  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  5004805 gatgtctgtatgataatgttatgtggaatgacatttattttatttttctattcata 5004750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 312 - 399
Target Start/End: Complemental strand, 46404439 - 46404353
Alignment:
Q  312 ggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||||||||||||||||| |||||||| ||||||||| |||||| | |||||||||| |  |||| | ||||||||||||||||||    
T  46404439 ggataacatcatattgcattattgtgccttagtggcgggttttagtgtgcattttcatgtttgtgca-tggcatatgcatctgtgtgg 46404353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 399
Target Start/End: Original strand, 8731155 - 8731260
Alignment:
Q  294 tgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatct 393  Q
    |||| |||||||| ||| || ||  |||||||||| ||||  ||  ||||||| || ||||||||||||||||||||||| ||||||||||||  |||||    
T  8731155 tgtggtgccttaggggcgggttagtatcatattgctttgtgatgtgtaagtggtggaatttagtcttcattttcatgatcatgcattagcataaacatct 8731254  T
Q  394 gtgtgg 399  Q
     |||||    
T  8731255 atgtgg 8731260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 399
Target Start/End: Original strand, 9083042 - 9083147
Alignment:
Q  294 tgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatct 393  Q
    |||| |||||||| ||| || ||  |||||||||| ||||  ||  ||||||| || ||||||||||||||||||||||| ||||||||||||  |||||    
T  9083042 tgtggtgccttaggggcgggttagtatcatattgctttgtgatgtgtaagtggtggaatttagtcttcattttcatgatcatgcattagcataaacatct 9083141  T
Q  394 gtgtgg 399  Q
     |||||    
T  9083142 atgtgg 9083147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 11967909 - 11967862
Alignment:
Q  96 gtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatga 145  Q
    ||||||||||||||||||||||  ||||||||||||||| ||||||||||    
T  11967909 gtggtattgggaaagaagtgtt--attttgttgataaactaaagaaatga 11967862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 350
Target Start/End: Complemental strand, 17542561 - 17542500
Alignment:
Q  289 ttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcggg 350  Q
    |||| |||| |||||| ||||||||  || ||||||||||||||||||| ||||||||||||    
T  17542561 ttctgtgtggtgcctttgtggcaggtaaatatcatattgcattgttgtgtctaagtggcggg 17542500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 7336509 - 7336446
Alignment:
Q  335 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||| ||||||||| |||||| | ||||||||||||| |||| | ||||||||||||||||||    
T  7336509 gtgccttagtggcgggttttagtttgcattttcatgatcatgca-tggcatatgcatctgtgtgg 7336446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 261 - 399
Target Start/End: Complemental strand, 4557850 - 4557709
Alignment:
Q  261 ttgccttagtggctggt--taataatatacttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtc 358  Q
    ||||||||||||| |||  |||||||||| |||| |||| ||||||||||||  ||||| ||||||||||||||||||||||||||||| ||||||||||    
T  4557850 ttgccttagtggcgggtattaataatatatttctgtgtggtgccttagtggcgcgataatatcatattgcattgttgtgcctaagtggctggatttagtc 4557751  T
Q  359 ttcatt-ttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||| ||||||||| ||||||||||||||||||| |||||    
T  4557750 ttcattgttcatgatcatgcattagcatatgcatctctgtgg 4557709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 312 - 399
Target Start/End: Original strand, 537188 - 537274
Alignment:
Q  312 ggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||||||||||||||||| |||||||| ||||||||| |||||| | |||||||||| || |||| | ||||||||||||||||||    
T  537188 ggataacatcatattgcattattgtgccttagtggcgggttttagtgtgcattttcatgttcgtgca-tggcatatgcatctgtgtgg 537274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 173
Target Start/End: Complemental strand, 4558056 - 4557914
Alignment:
Q  23 atgtgtgtatgataatgttatgtagaatgacatttattttatttttctatgcatagatgnnnnnnnnnnnnnngtggtattgggaaagaagtgttagatt 122  Q
    |||||||||| ||||||||| |||||||||| |||||||||||||  |||||||| |||              ||||||||| |||||||||||| ||||    
T  4558056 atgtgtgtataataatgttacgtagaatgacttttattttattttgatatgcatatatgttttttt-------gtggtattgagaaagaagtgttggatt 4557964  T
Q  123 ttgttgataaacaaaagaaatgaaaaataaagatatatgagttttatgaaa 173  Q
    |||||||||||| ||||||||| |||||| | | |||||||||||||||||    
T  4557963 ttgttgataaactaaagaaatg-aaaatatataaatatgagttttatgaaa 4557914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 331
Target Start/End: Original strand, 6309116 - 6309184
Alignment:
Q  262 tgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatcatattgcatt 331  Q
    |||||||||||| ||||| || |||| |||| |||| |||||||||||| || ||| |||||||||||||    
T  6309116 tgccttagtggcgggttactattata-ttctgtgtggtgccttagtggcgggttaatatcatattgcatt 6309184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 399
Target Start/End: Original strand, 42861801 - 42861869
Alignment:
Q  330 ttgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||| ||||||| ||||||||||| |   | ||||||||||||| ||||| |||||||||||||||||||    
T  42861801 ttgtggtgcctatgtggcgggattcatgatccattttcatgatcatgcat-agcatatgcatctgtgtgg 42861869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 399
Target Start/End: Original strand, 30910190 - 30910252
Alignment:
Q  335 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||| |||||||| ||||||||| ||||| ||||||| |||| | ||||||||||||||||||    
T  30910190 gtgccttagtggcgg-atttagtctgcatttccatgatcatgca-tggcatatgcatctgtgtgg 30910252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 399
Target Start/End: Original strand, 40691266 - 40691329
Alignment:
Q  335 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||| |||| |||| |||||||| ||||||||||||| ||||   ||||||||||||||||||    
T  40691266 gtgccttagtgacgggttttagtctgcattttcatgatcatgca-aggcatatgcatctgtgtgg 40691329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 319 - 399
Target Start/End: Complemental strand, 40841309 - 40841229
Alignment:
Q  319 atcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40841309 atcatattgcattgttgtgcctatgttgcgggatttagtcttcattttcatgatcatgcattagcatatgcatctgtgtgg 40841229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 357
Target Start/End: Original strand, 35840682 - 35840720
Alignment:
Q  319 atcatattgcattgttgtgcctaagtggcgggatttagt 357  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  35840682 atcatattgcattgttgtgcctaagtggcaagatttagt 35840720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 35840736 - 35840780
Alignment:
Q  335 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcat 379  Q
    ||||||||||||||||||||||| |||||| |||| ||| |||||    
T  35840736 gtgcctaagtggcgggatttagttttcattatcattatcatgcat 35840780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 399
Target Start/End: Original strand, 44436513 - 44436576
Alignment:
Q  335 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||| ||||| ||| ||||||||  |||||||||||| ||| || ||||||||||||||||||    
T  44436513 gtgccttagtggtgggttttagtctctattttcatgatcatgc-ttggcatatgcatctgtgtgg 44436576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 246 - 357
Target Start/End: Original strand, 9170 - 9281
Alignment:
Q  246 tatttgactatgcatttgccttagtggctggttaataatatacttctctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtg 345  Q
    |||||| |||||  |||||||||||||| ||||||||||||| |||| |||| |||||||||||| |||||||||||||||||||| |||||||| ||||    
T  9170 tatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtg 9269  T
Q  346 gcgggatttagt 357  Q
    ||||| ||||||    
T  9270 gcgggttttagt 9281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 9005 - 9051
Alignment:
Q  22 gatgtgtgtatgataatgttatgtagaatgacatttattttattttt 68  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||    
T  9005 gatgtctgtatgataatgttatgtggaatgacatttattttattttt 9051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 399
Target Start/End: Complemental strand, 28266963 - 28266864
Alignment:
Q  299 tgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtg 398  Q
    |||||||||||| | |||| ||||||||||||||||||||||  |||||||||||||||||||||||| |||||| |||| | |||||||||||| ||||    
T  28266963 tgccttagtggcggcataatatcatattgcattgttgtgcctgtgtggcgggatttagtcttcattttaatgatcatgca-tggcatatgcatctatgtg 28266865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 399
Target Start/End: Complemental strand, 12774243 - 12774144
Alignment:
Q  299 tgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtg 398  Q
    |||||||||||| |||||| |||||||  | |||| ||||||||||||||||||| |   ||||||||||||||| |||| | |||||||||||||||||    
T  12774243 tgccttagtggcgggataatatcatatctctttgtggtgcctaagtggcgggattcatgattcattttcatgatcatgca-tcgcatatgcatctgtgtg 12774145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 29270991 - 29271079
Alignment:
Q  292 tctgtgttgccttagtggcaggataacatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcatt 380  Q
    |||||| |||||||||||  || ||| |||||||||| |||  ||||||||||| ||||||||| | ||||||||||||||| ||||||    
T  29270991 tctgtggtgccttagtggtgggttaatatcatattgctttggggtgcctaagtgacgggatttaattttcattttcatgatcatgcatt 29271079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 18292509 - 18292446
Alignment:
Q  335 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||| ||||||||| |||||||| ||||||||||||| |||| | ||||||||||||||||||    
T  18292509 gtgccttagtggcgggttttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtgg 18292446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 40729242 - 40729179
Alignment:
Q  335 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||| ||||||||| |||||||| ||||||||||||| |||| | ||||||||||||||||||    
T  40729242 gtgccttagtggcgggttttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtgg 40729179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 407
Target Start/End: Complemental strand, 35670572 - 35670496
Alignment:
Q  330 ttgttgtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtggggtctgtg 407  Q
    |||| ||||||| ||||||||||| |   | ||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  35670572 ttgtggtgcctatgtggcgggattcatgatccattttcatgatcatgcat-agcatatgcatctgtgtggtgtctgtg 35670496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 41340068 - 41340005
Alignment:
Q  335 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||| ||||||||| |||||||||||||||||||| | |||| | ||||||||| ||||||||    
T  41340068 gtgccttagtggcgggttttagtcttcattttcatgaccatgca-tggcatatgcacctgtgtgg 41340005  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 350
Target Start/End: Original strand, 44788879 - 44788910
Alignment:
Q  319 atcatattgcattgttgtgcctaagtggcggg 350  Q
    ||||||||||||||||||||||||||||||||    
T  44788879 atcatattgcattgttgtgcctaagtggcggg 44788910  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 399
Target Start/End: Original strand, 40447872 - 40447935
Alignment:
Q  335 gtgcctaagtggcgggatttagtcttcattttcatgatcttgcattagcatatgcatctgtgtgg 399  Q
    |||||| ||||||||| |||||| | ||||||||||||| |||| |  |||||||||||||||||    
T  40447872 gtgccttagtggcgggttttagtttgcattttcatgatcatgca-tgtcatatgcatctgtgtgg 40447935  T

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Target: scaffold1838 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 339 - 394
Alignment:
Q  22 gatgtgtgtatgataatgttatgtagaatgacatttattttatttttctatgcata 77  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | |||||||    
T  339 gatgtgtgtatgataatgttatgtagaatgccatttattttattttgccatgcata 394  T

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