View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9306_low_18 (Length: 333)
Name: NF9306_low_18
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9306_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 45563262 - 45563010
Alignment:
| Q |
1 |
tttgctcaacattagcatgattgctgatcaagatcctgaactagatggtaattttactttcaatgtaccattttgtttttactgcctgcaactttacgac |
100 |
Q |
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| T |
45563262 |
tttgctcaacattagcatgattgctgatcaagatcctgaacaagatggtaattttactttcaatgtaccattttgtttttactgcctgcaactttacgac |
45563163 |
T |
|
| Q |
101 |
ggacatctgtaactcaatgcatacaatgtaacttaggcattcagatttagtgtgtcactttgtttaataggtcttttataaatttaatccgctatttatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45563162 |
ggacatctgtaactcaatgcatacaatgtaacttaggcattcagatttagtgtgtcactttgtttaataggtcttttataaatttattccgctatttatt |
45563063 |
T |
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| Q |
201 |
ctggttatgactctcaattttcgctctttggttgcattctttatgcttcatat |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45563062 |
ctggttatgactctcaattttcgctctttggttgcattctttatgcttcatat |
45563010 |
T |
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