View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9306_low_19 (Length: 331)
Name: NF9306_low_19
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9306_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 510188 - 510397
Alignment:
| Q |
13 |
agcagagaagacccaagcagcactgaaatacaataatttcaaacaaacgtcagtatactatactattaattacattcttgataaatgtcaaagtgattga |
112 |
Q |
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| T |
510188 |
agcagagaagacccaagcagcactgaaatacaataatttcaaacaaacgtcagtatactatactattaattacattcttgataaatgtcaaagtggttga |
510287 |
T |
|
| Q |
113 |
attgaagacagaagatgtttttgcgtgcataaaggattacattgcattatagagaagaagaatagctatttgaacattcattcaagttgagcttcaacta |
212 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
510288 |
attgaagacagaagatg-ttttgcgtgcataaaggattacattgcattatagagaagaagaatagctatttgaacattcattcaagttgagcttcaacta |
510386 |
T |
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| Q |
213 |
gctagcttatg |
223 |
Q |
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||||||||||| |
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| T |
510387 |
gctagcttatg |
510397 |
T |
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