View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9306_low_2 (Length: 622)
Name: NF9306_low_2
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9306_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 14 - 622
Target Start/End: Complemental strand, 17469091 - 17468481
Alignment:
| Q |
14 |
ctatggtcccttgtactagctctaatgttgttgactcattggcctatagagtttaaaatcctgcaggtatgactgaagca---actgtttgatttgctat |
110 |
Q |
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| T |
17469091 |
ctatggtcccttgtactagctctaatgttgttgactcattggccta--gagtttaaaatcctgcaggtatgactgaagcagcaactgtttgatttgctat |
17468994 |
T |
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| Q |
111 |
gtggagggaaactaatcctccagcaactgaagagcaaggttcgaggatattgaagcattgatctcttcttgaagtagctcgaggattcttgcacggtact |
210 |
Q |
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| T |
17468993 |
gtggagggaaactaatcctccagcaactgaagagcaaggttcgaggatatcgaagcattgatctcttgttgaagtagctcgaggattcttgcacggtact |
17468894 |
T |
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| Q |
211 |
ctctaattactcgtgcacgaggttcaattcttagccatagaccacgaggttcactcgaatttagtgctcaacagcagcaccatggagagaactctcaaat |
310 |
Q |
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| T |
17468893 |
ctctaattactcgtgcatgaggttcaattctcagccatagaccacgaggttcactcgaatttagttctcaacagcagcaccatggagagaactctcaaat |
17468794 |
T |
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| Q |
311 |
aggacttctgtgacaatgaaatcaccaatataagaggtgttaattttaaagaacacacaagatatgcatgaatactcttggaatgtcaaataatactcaa |
410 |
Q |
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| T |
17468793 |
aggacttctgtgacaatgaaatcaccaatataagaggtgttgattttaaagaacacacaagatatgcatgaatactcttggaatttcaaataatactcaa |
17468694 |
T |
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| Q |
411 |
tgcaacaattaaagtggaaaatagcatgaaatgcaatccatttcttagatcctatgacatgaattgtaaagaatgaattcaagtacactggaattaaggg |
510 |
Q |
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| T |
17468693 |
tgcaacaattaaagttgaaaatagcatgaaatgcaatccatttcttagatcctatgacatgaattgtaaagaatgaatccaagtacactggatttaaggg |
17468594 |
T |
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| Q |
511 |
aaaacaatacagaaagctt-agaccatgtttactttgtgaacatatatttgttttcattttctaaaatttgtgctaattttcctcactatcaaagagaaa |
609 |
Q |
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| T |
17468593 |
aaaacaatacagaaagcttaagaccatgtttactttgtgaacatatatttgttttcattttctaaaatttgtgctaattttcctcactatcaaagagaaa |
17468494 |
T |
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| Q |
610 |
tatatttgtttcc |
622 |
Q |
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| T |
17468493 |
tatatttgtttcc |
17468481 |
T |
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