View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9306_low_22 (Length: 322)
Name: NF9306_low_22
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9306_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 15185417 - 15185116
Alignment:
| Q |
18 |
acaataagagaatatagaaataattgcaaaaacaaaatttgattgcgatccaaacattttctttcccaaaaaatacaagcaaaagagacatagatagcac |
117 |
Q |
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| T |
15185417 |
acaataagagaatatagaaataattgcaaaaacaaaatttgattgcgatccaaacattttctttcccaaaaaatacaagcacaagagacatagatagcac |
15185318 |
T |
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| Q |
118 |
gtagaatatgatatgtaaattcttgcataaaaaataactatgatatgacaatgcttaagcagtgtactgaatcattggacttgatcattttcctacaagt |
217 |
Q |
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| T |
15185317 |
gtagaatatgatatgtaaattcttgcataaaaaataactatgatatgacaatgcttaagcagtgtactgaatcattggacttgatcattttcctacaagt |
15185218 |
T |
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| Q |
218 |
aggacaaaaagaatgagcaagtaaccattcatcaatgcaaacaacatgaaaacgatggttacactttggtagcaacttcatgttatctccaccaccaaac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
15185217 |
aggacaaaaagaatgagcaagtaaccattcatcaatgcaaacaacatgaaaacgatggttacactttggtagcaacttcatgttatctccatcacaaaac |
15185118 |
T |
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| Q |
318 |
tc |
319 |
Q |
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|| |
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| T |
15185117 |
tc |
15185116 |
T |
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