View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9306_low_23 (Length: 317)
Name: NF9306_low_23
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9306_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 52836425 - 52836131
Alignment:
| Q |
1 |
aatgaaaacaactaatcagtaaaagaaaggcaaaaaagctcacaatctggggacattcataatcaatgccagcagcctctatcaatgt------tttttg |
94 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| |
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| T |
52836425 |
aatgaaaacaactaatcagtaaaagaaaggctaaaaagctcacaatctggggacattcataatcaatgccagcagcctctatcattttccgacttttttg |
52836326 |
T |
|
| Q |
95 |
tcacgtttcataaccctgtcagccaactttttgtgttcttccaatgttctttcctgaaaaggcagcaataatgaatacacttcctttttatacattggca |
194 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52836325 |
tcacgtttcataaccctgtcaaccaactttttgtgttcttccaatgttctttcctgaaaaggcagcaataatgaatacacttcctttttataca-tggca |
52836227 |
T |
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| Q |
195 |
ccatactaacacaaaatacaaaagatgcacttcctcatcacactaaataccttgtcatgtcgttcccattcaatttggagagagtccagaggcttg |
290 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
52836226 |
ccatactaacacaaaatacaaaagatggacttcctcatcacactaaataccttgtcatgtcgttcccgttcaatttggagagagtccagaggcttg |
52836131 |
T |
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Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 5 - 292
Target Start/End: Original strand, 48967527 - 48967819
Alignment:
| Q |
5 |
aaaacaactaatcagtaaaagaaaggc-aaaaaagctcacaatctggggacattcataatcaatgccagcagcctctatcaat-------gttttttgtc |
96 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
48967527 |
aaaacaactaatcagtcaaagaaaggcgaaaaaagctcacaatctcaggacattcataatcaatgccagcagcctctatctttttacgtcgttttttgtc |
48967626 |
T |
|
| Q |
97 |
acgtttcataaccctgtcagccaactttttgtgttcttccaatgttctttcctgaaaaggcagcaataatgaatacacttcctttttatacattggcacc |
196 |
Q |
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||| |||||||| || ||| ||||||||||||||||||||||||||||||||||||| | ||||||| | |||| || ||||||||||| ||||| |
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| T |
48967627 |
acgcttcataactctatcaaccaactttttgtgttcttccaatgttctttcctgaaataataacaataattagtacattttctttttataca-gagcacc |
48967725 |
T |
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| Q |
197 |
atactaacacaaaatacaaaagatgcacttcctcatcacactaaataccttgtcatgtcgttcccattcaatttggagagagtccagaggcttgta |
292 |
Q |
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| | || || ||||||||| ||| ||||||||||||||||| |||||||||||||| | || | |||||||||||| | ||||| |||||||| |
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| T |
48967726 |
agagta--actaaatacaaatgatatacttcctcatcacactagataccttgtcatgtagctctcgttcaatttggagtgtgtccaagggcttgta |
48967819 |
T |
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