View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9306_low_29 (Length: 291)
Name: NF9306_low_29
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9306_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 9 - 275
Target Start/End: Complemental strand, 49449393 - 49449127
Alignment:
| Q |
9 |
aatgagataaacaacatcaacaacaagaacacggtggttgattttgaaccaagaatttacatagttagttggaatgatcatttctttattttgaaggtag |
108 |
Q |
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| T |
49449393 |
aatgagataaacaacatcaacaacaagaacacggtggttgattttgaaccaagaatttacatagttagttggaatgatcatttctttattttgaaggtag |
49449294 |
T |
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| Q |
109 |
aggttgatgcttactatatcattgattcattgggtgagagactttttgaagggtgtcaaagggcatttgtgttgaagtttgatgattcatgtgtgatgta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49449293 |
aggttgatgcttactatatcattgattcattgggtgagagactttttgaagggtgtcaaagggcatttgtgttgaagtttgatgattcatgtgtgatgta |
49449194 |
T |
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| Q |
209 |
tgggaaagtagataaaaatgaagaaaaagttaataaggatgtgggtacaaagagtagttcaagaggt |
275 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49449193 |
tgggaaagtagataaaaatgaagaagaagttaataaggatgtgggtacaaagagtagttcaagaggt |
49449127 |
T |
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