View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9306_low_3 (Length: 525)
Name: NF9306_low_3
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9306_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 16 - 508
Target Start/End: Complemental strand, 46899320 - 46898828
Alignment:
| Q |
16 |
tatactctgaggatcttttgaaatcttcacgtttcttctctttggtggttttacggattcagggtctatgtaaattggttgcatagctgctattctgaat |
115 |
Q |
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| T |
46899320 |
tatactctgaggatcttttgaaatcttcacgtttcttctctttggtggttttacggattcagggtctatgtaaattggttgcatagctgctattctgaat |
46899221 |
T |
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| Q |
116 |
atcatctccctcatcgccgccatcgagtttcgtttctctgatggcgacgcagtaccataatggttcgtattcggagcaatctcgttgctcgaattcgaaa |
215 |
Q |
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| T |
46899220 |
atcatctccctcatcgccgccatcgagtttcgtttctctgatggcgatgcagtaccataatggttcgtattcggagcaatctcgttgctcgaattcgaaa |
46899121 |
T |
|
| Q |
216 |
acattaacggtgttgtttgttgttgttggaacattaatggtgtagagttgttattggtgaaatagattgtgtttgtatttgtggtggattgtgaaggtaa |
315 |
Q |
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| T |
46899120 |
acattaacggtgttgtttgttgttgttggaacattaatggtgtagagttgttattggtgaaatagattgtgtttgtatttgtggtggattgtgaaggtaa |
46899021 |
T |
|
| Q |
316 |
gtgagtgaatgatgaagatgaagaccatggtatttgattaggagggttatctattaaatctgcaagaggacgtgtattgttagaagcatttgaagtgcca |
415 |
Q |
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| T |
46899020 |
gtgagtgaatgatgaagatgaagaccatggtatttgattaggagggttatctattaaatctgcaagaggacgtgtattgttagaagcatttgaagtgcca |
46898921 |
T |
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| Q |
416 |
tagaattgttgatctgacggtggaaattgattgatggtgttgttattaccgttagatgaagaaaattcagggagttgcatcatcatcattaac |
508 |
Q |
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| T |
46898920 |
tagaattgttgatctgacggtggaaattgattgatggtgttgttattaccgttagatgaagaaaattcagggagttgcatcatcatcattaac |
46898828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 6259584 - 6259481
Alignment:
| Q |
26 |
ggatcttttgaaatcttcacgtttcttctctttggtggttttacggattcagggtctatgtaaattggttgcatagctgctattctgaatatcatctccc |
125 |
Q |
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||||| |||||||||||||| || |||||||||||||||||| || ||| |||||||||| ||| ||||||||| | || || | ||||||||| || | |
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| T |
6259584 |
ggatcctttgaaatcttcacattctttctctttggtggttttatggtttctgggtctatgttaatcggttgcataaccgccatacggaatatcatttctc |
6259485 |
T |
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| Q |
126 |
tcat |
129 |
Q |
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|||| |
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| T |
6259484 |
tcat |
6259481 |
T |
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