View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9306_low_30 (Length: 284)
Name: NF9306_low_30
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9306_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 39557099 - 39557361
Alignment:
| Q |
17 |
agttttgtcgccactttttgttaaactttttcaaaacaaaacatgtgaaatggaaaactctcataataagtagtttaattagttggtttctcttcggatt |
116 |
Q |
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| T |
39557099 |
agttttgtcgccactttttgttaaactttttcaaaacaaaacatgtgaaatggaaaactctcataataagtagtttaattagttggtttctcttcggatt |
39557198 |
T |
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| Q |
117 |
gttaatcacatcacataataatgtcattgccttagttatacaagtactagttagttaaaggtcgaatcaaacaatatgatgatctctatatattagcatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39557199 |
gttaatcacatcacataataatgtcattgccttagttatacaagtactagttagttaaaggtcgaatcaaacaatatgatgatctctatatattagcatt |
39557298 |
T |
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| Q |
217 |
ataattaatttcaaccataagctctttatcaatcaaactcctacgtctaattaacctccaaac |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39557299 |
ataattaatttcaaccataagctctttatcaatcaaactcctacgtctaattaacctccaaac |
39557361 |
T |
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