View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9306_low_35 (Length: 269)
Name: NF9306_low_35
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9306_low_35 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 33603 - 33386
Alignment:
| Q |
19 |
aattgtgttgttgtgctttctctctattctctgatccatttctaacaatataccattttctcttaaaggctatcatttgattgaaattgatacaaacaat |
118 |
Q |
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| T |
33603 |
aattgtgttgttatgctttctctctattctctgatccatttctaacagtatgccattttctcttaaaggctatcattagattgaaagtgatacaaacaat |
33504 |
T |
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| Q |
119 |
tacttcgtatcaattcaaatttgtgtagcaccgaaagggagccttgaaccaatatttgtgagaattcatgagagccattgtttatct---gaaacttttg |
215 |
Q |
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| T |
33503 |
tccttcgtatcaattcaaattcgtgtagcaccgaaagggagccttgaaccaatatttgcgagaattcatgagagccattgtttatctccgggaacttttg |
33404 |
T |
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| Q |
216 |
tgtctaggaagaaaactc |
233 |
Q |
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||||||| |||||||||| |
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| T |
33403 |
tgtctagaaagaaaactc |
33386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 18293171 - 18292972
Alignment:
| Q |
19 |
aattgtgttgttgtgctttctctctattctctgatccatttctaacaatataccattttctcttaaaggctatcatttgattgaaattgatacaaacaat |
118 |
Q |
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| T |
18293171 |
aattgtgttgttgtgctttctctctattctctgatccatttctaacaatataccattttctcttaaaggctat------------------acaaacaat |
18293090 |
T |
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| Q |
119 |
tacttcgtatcaattcaaatttgtgtagcaccgaaagggagccttgaaccaatatttgtgagaattcatgagagccattgtttatct---gaaacttttg |
215 |
Q |
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| T |
18293089 |
tccttcgtatcaattcaaattcgtgtagcaccgaaagggagccttgaaccaatatttgtgagaattcatgagagccattgtttatctccgggaacttttg |
18292990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 7503728 - 7503828
Alignment:
| Q |
19 |
aattgtgttgttgtgctttctctctattctctgatccatttctaacaatataccattttctcttaaaggctatcatttgattgaaattgatacaaacaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7503728 |
aattgtgttgttgtgctttctctctattctctgatccatttctaacaatataccattttctcttaaaggctatcatttgattgaaagtgatacaaacaat |
7503827 |
T |
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| Q |
119 |
t |
119 |
Q |
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| T |
7503828 |
t |
7503828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 7503843 - 7503916
Alignment:
| Q |
171 |
tatttgtgagaattcatgagagccattgtttatct---gaaacttttgtgtctaggaagaaaactcctaagataagg |
244 |
Q |
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| T |
7503843 |
tatttgtgagaattcatgagagccattgtttatctccgggaacttttgtgtct---aagaaaactcctaaggtaagg |
7503916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 85 - 233
Target Start/End: Original strand, 24158715 - 24158862
Alignment:
| Q |
85 |
aggctatcatttgattgaaattgatacaaacaattacttcgtatcaattcaaatttgtgtagcaccgaaagggagccttgaaccaatatttgtgagaatt |
184 |
Q |
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|||||||||||||||||||| |||||||| | | | |||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||| || |
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| T |
24158715 |
aggctatcatttgattgaaagtgatacaatccaat----cgtatcaattcaaattcatgtagcaccaaaagggaaccttgaaccaatatttgtgagagtt |
24158810 |
T |
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| Q |
185 |
catgagagccattgtttatct---gaaacttttgtgtctaggaagaaaactc |
233 |
Q |
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| T |
24158811 |
catgacagccactatttgtctcgggaaaattttgtgtccaggaagacaactc |
24158862 |
T |
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